C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Iroquois related homeobox 1 (Drosophila)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000077337 Irx1-001 ENSMUSG00000060969 10090 - 13:71957921-71963723 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000077337
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000077337 0.078±0.06 0.029±0.01 0.017±0.01 5.904±3.93 23.996±14.35 0.012±0.00 2.224±0.46 17.064±2.91 0.097±0.05 55.706±23.54 0.063±0.02 0.058±0.03 0.532±0.21 0.414±0.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OW CIL_0007OW_0003 UCNEbase 13:71053181-73117527
CIL_0008Y1 CIL_0008Y1_0002 VISTA 13:71728466-72329899

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IEP metanephros development
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0072086 IEP specification of loop of Henle identity
GO:0072272 IEP proximal/distal pattern formation involved in metanephric nephron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000231357 IRX4-001 protein_coding Homo_sapiens 0 261
ENST00000302006 IRX1-001 protein_coding Homo_sapiens 0 1762
ENST00000302057 IRX2-002 protein_coding Homo_sapiens 0 237
ENST00000382611 IRX2-001 protein_coding Homo_sapiens 0 237
ENST00000505790 IRX4-004 protein_coding Homo_sapiens 0 261
ENST00000505938 IRX4-006 processed_transcript Homo_sapiens 0 261
ENST00000508261 IRX4-002 nonsense_mediated_decay Homo_sapiens 0 261
ENST00000511126 IRX4-005 protein_coding Homo_sapiens 7.00649e-43 178
ENST00000513692 IRX4-003 protein_coding Homo_sapiens 0 261
ENST00000613726 IRX4-201 protein_coding Homo_sapiens 0 261
ENST00000622814 IRX4-202 protein_coding Homo_sapiens 0 261

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