C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: iroquois homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000382611 IRX2-001 ENSG00000170561 9606 - 5:2745845-2751662 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000382611
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000382611 0.920±0.00 0.085±0.00 0.072±0.00 3.689±0.00 0.096±0.00 1.376±1.35 8.025±0.00 0.019±0.00 3.378±0.00 0.205±0.20 6.297±3.56 1.021±0.63

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OW CIL_0007OW_0001 UCNEbase 5:2112412-4025148

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001656 IEA metanephros development
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0043565 IEA sequence-specific DNA binding
GO:0072086 IEA specification of loop of Henle identity
GO:0072272 IEA proximal/distal pattern formation involved in metanephric nephron development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000074372 Irx2-001 protein_coding Mus_musculus 0 2549
ENSMUST00000169028 Irx2-003 processed_transcript Mus_musculus 0 616
ENSMUST00000172353 Irx2-004 protein_coding Mus_musculus 0 549
ENSMUST00000167067 Irx2-005 protein_coding Mus_musculus 0 409
ENSMUST00000034184 Irx5-001 protein_coding Mus_musculus 0 375
ENSDART00000016303 irx2a-001 protein_coding Danio_rerio 0 351
ENSMUST00000163393 Irx2-006 retained_intron Mus_musculus 0 350
ENSDART00000148602 irx2a-002 retained_intron Danio_rerio 0 311
ENSMUST00000175795 Irx3-001 protein_coding Mus_musculus 0 283
ENSMUST00000093312 Irx3-002 protein_coding Mus_musculus 0 283
ENSMUST00000167261 Irx6-002 protein_coding Mus_musculus 0 265
ENSMUST00000034185 Irx6-001 protein_coding Mus_musculus 0 265
ENSMUST00000022095 Irx4-001 protein_coding Mus_musculus 0 239
ENSMUST00000176684 Irx4-002 protein_coding Mus_musculus 0 239
ENSMUST00000077337 Irx1-001 protein_coding Mus_musculus 0 237

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