C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Hedgehog-interacting protein
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079038 Hhip-001 ENSMUSG00000064325 10090 - 8:79970345-80058006 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000079038
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000079038 0.309±0.30 0.198±0.05 0.217±0.10 0.146±0.05 1.344±0.35 0.030±0.02 0.127±0.05 0.123±0.06 3.302±1.09 0.019±0.01 0.845±0.36 0.089±0.04 0.124±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YN CIL_0008YN_0002 VISTA 8:79537628-80138676
CIL_0007O9 CIL_0007O9_0002 UCNEbase 8:79748250-80315212
CIL_0008YM CIL_0008YM_0002 VISTA 8:79755435-80357135

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 IEA extracellular region
GO:0005887 IDA integral component of plasma membrane
GO:0005975 IEA carbohydrate metabolic process
GO:0007165 IDA signal transduction
GO:0007224 IMP smoothened signaling pathway
GO:0007405 IGI neuroblast proliferation
GO:0008270 ISS zinc ion binding
GO:0009887 IMP organ morphogenesis
GO:0009953 IGI dorsal/ventral pattern formation
GO:0009968 ISS negative regulation of signal transduction
GO:0009986 IDA cell surface
GO:0016525 NAS negative regulation of angiogenesis
GO:0016901 IEA oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor
GO:0040036 IMP regulation of fibroblast growth factor receptor signaling pathway
GO:0045879 IDA negative regulation of smoothened signaling pathway
GO:0048038 IEA quinone binding
GO:0048705 IMP skeletal system morphogenesis
GO:0055114 IEA oxidation-reduction process
GO:0060441 IMP epithelial tube branching involved in lung morphogenesis
GO:0097108 IEA hedgehog family protein binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000296575 HHIP-001 protein_coding Homo_sapiens 0 3397
ENST00000434550 HHIP-002 protein_coding Homo_sapiens 0 1090
ENST00000503090 HHIP-005 processed_transcript Homo_sapiens 0 220
ENST00000505891 HHIP-008 processed_transcript Homo_sapiens 0 230
ENST00000509630 HHIP-004 processed_transcript Homo_sapiens 0 556
ENST00000511314 HHIP-003 processed_transcript Homo_sapiens 0 418
ENST00000512791 HHIP-006 retained_intron Homo_sapiens 1e-31 141

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