C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 4825
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000079690 Gm4825-001 ENSMUSG00000063548 10090 + 15:85510812-85511219 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainLiverOvaryPlacentaTestisENSMUST00000079690
Transcript ID Brain Liver Ovary Placenta Testis
ENSMUST00000079690 0.182±0.12 0.048±0.00 0.237±0.00 0.258±0.11 0.472±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008KW CIL_0008KW_0002 VISTA 15:85164142-85764949

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253788 RPL27-001 protein_coding Homo_sapiens 0 422
ENST00000411843 AC096664.1-001 processed_pseudogene Homo_sapiens 0 363
ENST00000425821 RP4-604A21.1-001 processed_pseudogene Homo_sapiens 0 241
ENST00000427253 AC009362.2-001 processed_pseudogene Homo_sapiens 0 353
ENST00000477507 CTD-2186M15.1-001 processed_pseudogene Homo_sapiens 0 339
ENST00000586277 RPL27-006 protein_coding Homo_sapiens 0 316
ENST00000589037 RPL27-004 protein_coding Homo_sapiens 0 422
ENST00000589913 RPL27-003 protein_coding Homo_sapiens 0 422
ENST00000590864 RPL27-008 protein_coding Homo_sapiens 0 315
ENST00000593262 RPL27-002 retained_intron Homo_sapiens 0 315

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