C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoinositide kinase, FYVE finger containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000081154 Pikfyve-001 ENSMUSG00000025949 10090 + 1:65186702-65278695 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000081154
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000081154 1.441±0.32 1.414±0.45 0.851±0.57 3.936±0.34 1.742±0.81 1.116±0.31 0.267±0.05 0.695±0.15 0.568±0.46 1.032±0.33 0.292±0.10 1.623±0.95 0.837±0.28 0.682±0.35

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014C CIL_00014C_0002 CGP 1:65158616-65278695
CIL_0006P3 CIL_0006P3_0002 CGP 1:65186683-65389244

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005829 IDA cytosol
GO:0005911 IDA cell-cell junction
GO:0010008 IEA endosome membrane
GO:0016307 IEA phosphatidylinositol phosphate kinase activity
GO:0031410 IDA cytoplasmic vesicle
GO:0031901 IEA early endosome membrane
GO:0032288 IGI myelin assembly
GO:0034504 IEA protein localization to nucleus
GO:0035556 IEA intracellular signal transduction
GO:0042147 IEA retrograde transport, endosome to Golgi
GO:0044267 IEA cellular protein metabolic process
GO:0045121 IEA membrane raft
GO:0046854 IEA phosphatidylinositol phosphorylation
GO:0046872 IEA metal ion binding
GO:0048471 IDA perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264380 PIKFYVE-001 protein_coding Homo_sapiens 0 5949
ENST00000308862 PIKFYVE-005 protein_coding Homo_sapiens 0 1223
ENST00000392202 PIKFYVE-002 protein_coding Homo_sapiens 0 1219
ENST00000407449 PIKFYVE-004 protein_coding Homo_sapiens 0 1640
ENST00000422495 PIKFYVE-009 protein_coding Homo_sapiens 0 979
ENST00000443896 PIKFYVE-003 nonsense_mediated_decay Homo_sapiens 0 2026
ENST00000452564 PIKFYVE-006 protein_coding Homo_sapiens 0 4977
ENST00000474721 PIKFYVE-008 processed_transcript Homo_sapiens 0 479
ENST00000477200 PIKFYVE-007 retained_intron Homo_sapiens 0 569

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