C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006P3_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000115020-ENSG00000144407 CGP 9606 2:208266267-208854503
GeneTranscriptPositionBiotype
ENSG00000115020 (PIKFYVE)
phosphoinositide kinase, FYVE finger containing 		ENST00000264380 (PIKFYVE-001) 208266267-208358751 protein_coding
ENST00000308862 (PIKFYVE-005) 208266278-208305128 protein_coding
ENST00000392202 (PIKFYVE-002) 208266267-208305549 protein_coding
ENST00000407449 (PIKFYVE-004) 208266278-208305128 protein_coding
ENST00000422495 (PIKFYVE-009) 208266357-208285800 protein_coding
ENST00000443896 (PIKFYVE-003) 208266267-208326107 nonsense_mediated_decay
ENST00000452564 (PIKFYVE-006) 208266363-208335856 protein_coding
ENST00000474721 (PIKFYVE-008) 208334372-208336865 processed_transcript
ENST00000477200 (PIKFYVE-007) 208298641-208302580 retained_intron
ENSG00000144407 (PTH2R)
parathyroid hormone 2 receptor 		ENST00000272847 (PTH2R-001) 208406831-208494506 protein_coding
ENST00000419079 (PTH2R-003) 208489086-208840100 nonsense_mediated_decay
ENST00000487472 (PTH2R-004) 208838363-208854503 processed_transcript
ENST00000617735 (PTH2R-002) 208359714-208494029 protein_coding
ENSG00000213081 (AC012362.3)
 ENST00000434906 (AC012362.3-001) 208360631-208361369 processed_pseudogene
ENSG00000227430 (AC019185.2)
 ENST00000442718 (AC019185.2-001) 208466238-208466626 processed_pseudogene
ENSG00000228380 (AC016697.2)
 ENST00000429485 (AC016697.2-001) 208269343-208269957 processed_pseudogene
ENSG00000231896 (AC019185.4)
 ENST00000424628 (AC019185.4-001) 208469850-208540413 sense_intronic

Homo sapiens Ensembl (GRCh38)

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CIL_0006P3_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025949-ENSMUSG00000025946 CGP 10090 1:65186683-65389244
GeneTranscriptPositionBiotype
ENSMUSG00000025946 (Pth2r)
parathyroid hormone 2 receptor 		ENSMUST00000027083 (Pth2r-001) 65311257-65389244 protein_coding
ENSMUST00000140190 (Pth2r-002) 65282056-65345341 protein_coding
ENSMUSG00000025949 (Pikfyve)
phosphoinositide kinase, FYVE finger containing 		ENSMUST00000081154 (Pikfyve-001) 65186702-65278695 protein_coding
ENSMUST00000097707 (Pikfyve-006) 65186750-65274012 protein_coding
ENSMUST00000185263 (Pikfyve-008) 65186713-65192187 nonsense_mediated_decay
ENSMUST00000185317 (Pikfyve-002) 65186683-65205706 retained_intron
ENSMUST00000186404 (Pikfyve-005) 65186704-65233284 retained_intron
ENSMUST00000187579 (Pikfyve-003) 65186694-65192483 retained_intron
ENSMUST00000188799 (Pikfyve-010) 65186693-65226117 retained_intron
ENSMUST00000189925 (Pikfyve-004) 65186696-65206174 processed_transcript
ENSMUST00000190058 (Pikfyve-007) 65186689-65246898 nonsense_mediated_decay
ENSMUST00000190847 (Pikfyve-009) 65196760-65216262 retained_intron

Mus musculus Ensembl (GRCm38)

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Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006P3_0001ENSG00000115020ENST00000264380ENST00000308862ENST00000392202ENST00000407449ENST00000422495ENST00000443896ENST00000452564ENST00000474721ENST00000477200ENSG00000144407ENST00000272847ENST00000419079ENST00000487472ENST00000617735ENSG00000213081ENST00000434906ENSG00000227430ENST00000442718ENSG00000228380ENST00000429485ENSG00000231896ENST00000424628CIL_0006P3_0002ENSMUSG00000025946ENSMUST00000027083ENSMUST00000140190ENSMUSG00000025949ENSMUST00000081154ENSMUST00000097707ENSMUST00000185263ENSMUST00000185317ENSMUST00000186404ENSMUST00000187579ENSMUST00000188799ENSMUST00000189925ENSMUST00000190058ENSMUST00000190847
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006P3_0001ENSG00000115020ENST00000264380ENST00000392202ENST00000443896ENST00000452564ENSG00000144407ENST00000272847ENST00000419079ENST00000487472ENST00000617735ENSG00000213081ENST00000434906ENSG00000227430ENST00000442718ENSG00000228380ENST00000429485ENSG00000231896ENST00000424628CIL_0006P3_0002ENSMUSG00000025946ENSMUST00000027083ENSMUST00000140190ENSMUSG00000025949ENSMUST00000081154ENSMUST00000097707ENSMUST00000185263ENSMUST00000185317ENSMUST00000186404ENSMUST00000190058
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000115020 ENST00000264380 1.260±0.00 0.757±0.00 1.736±0.00 0.569±0.00 2.185±1.44 0.778±0.24 1.125±0.00 1.101±0.00 N/A 1.100±0.43 N/A 1.272±0.91 0.403±0.06 3.257±1.72
ENST00000308862 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000392202 N/A N/A 4.383±0.00 N/A N/A 4.664±0.00 N/A N/A 4.746±0.00 N/A N/A 6.422±0.00 N/A N/A
ENST00000407449 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000422495 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000443896 N/A N/A 1.526±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000452564 N/A N/A N/A N/A N/A N/A 0.764±0.00 N/A 2.662±0.00 N/A N/A N/A N/A N/A
ENST00000474721 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000477200 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000144407 ENST00000272847 0.124±0.00 N/A N/A 0.643±0.14 0.951±0.00 0.106±0.08 N/A N/A 0.015±0.00 N/A N/A 0.083±0.08 0.591±0.40 0.453±0.19
ENST00000419079 N/A 0.058±0.00 N/A N/A N/A N/A 0.025±0.00 N/A N/A N/A N/A N/A N/A 0.177±0.00
ENST00000487472 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.029±0.00 N/A 0.321±0.00
ENST00000617735 0.087±0.00 0.118±0.00 N/A 0.407±0.13 0.256±0.22 0.044±0.00 0.096±0.00 0.278±0.00 0.081±0.01 N/A N/A N/A 0.298±0.00 0.081±0.00
ENSG00000213081 ENST00000434906 N/A N/A N/A N/A N/A 0.422±0.00 N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000227430 ENST00000442718 N/A N/A N/A 0.144±0.00 N/A N/A N/A N/A 0.819±0.00 N/A N/A N/A N/A N/A
ENSG00000228380 ENST00000429485 0.029±0.00 N/A N/A N/A 0.070±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000231896 ENST00000424628 0.378±0.00 0.924±0.00 N/A 0.343±0.00 0.274±0.00 0.343±0.00 0.149±0.00 0.476±0.00 0.086±0.00 0.061±0.00 0.143±0.00 0.184±0.00 N/A 0.233±0.09
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025946 ENSMUST00000027083 N/A N/A 0.020±0.00 0.216±0.09 0.015±0.00 N/A N/A 0.019±0.01 0.012±0.00 N/A 0.026±0.00 0.058±0.04 0.017±0.01 N/A
ENSMUST00000140190 N/A N/A N/A N/A N/A N/A N/A 0.069±0.00 0.027±0.00 N/A N/A N/A N/A 1.469±0.00
ENSMUSG00000025949 ENSMUST00000081154 1.441±0.32 1.414±0.45 0.851±0.57 3.936±0.34 1.742±0.81 1.116±0.31 0.267±0.05 0.695±0.15 0.568±0.46 1.032±0.33 0.292±0.10 1.623±0.95 0.837±0.28 0.682±0.35
ENSMUST00000097707 1.568±0.39 N/A N/A N/A 1.600±1.22 N/A 0.554±0.19 0.649±0.00 0.577±0.13 N/A N/A 1.790±0.48 1.393±0.15 0.873±0.22
ENSMUST00000185263 N/A 5.928±1.64 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000185317 N/A 2.920±0.00 N/A N/A 5.911±0.00 1.900±0.12 N/A N/A N/A 3.758±0.00 N/A 3.098±0.00 N/A N/A
ENSMUST00000186404 N/A 1.112±0.23 N/A N/A N/A 0.696±0.07 N/A N/A 0.538±0.03 N/A N/A 1.044±0.05 N/A N/A
ENSMUST00000187579 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000188799 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000189925 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000190058 N/A 0.949±0.09 N/A N/A 1.863±0.60 0.876±0.10 N/A N/A N/A N/A N/A 1.962±0.58 N/A N/A
ENSMUST00000190847 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A

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