C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cut-like homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086317 Cux2-002 ENSMUSG00000042589 10090 - 5:121860216-122047825 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalHeartKidneyLiverLungMuscleOvaryENSMUST00000086317
Transcript ID Adipose Adrenal Heart Kidney Liver Lung Muscle Ovary
ENSMUST00000086317 0.123±0.00 1.696±0.43 0.682±0.00 0.161±0.04 0.453±0.00 0.227±0.00 0.093±0.00 0.537±0.26

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008TJ CIL_0008TJ_0002 VISTA 5:121625608-122227679
CIL_000903 CIL_000903_0002 VISTA 5:121732502-122333355
CIL_0008YU CIL_0008YU_0002 VISTA 5:121792218-122394768
CIL_0001G2 CIL_0001G2_0002 CGP 5:121858387-122113472

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 IMP RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003677 IDA DNA binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007614 IMP short-term memory
GO:0010628 IMP positive regulation of gene expression
GO:0045892 IDA negative regulation of transcription, DNA-templated
GO:0050775 IMP positive regulation of dendrite morphogenesis
GO:0051965 IMP positive regulation of synapse assembly
GO:0061003 IMP positive regulation of dendritic spine morphogenesis
GO:0071310 IDA cellular response to organic substance
GO:2000463 IMP positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000142846 cux2b-202 protein_coding Danio_rerio 0 422
ENSDART00000135006 cux2b-001 protein_coding Danio_rerio 0 422
ENSDART00000136245 cux1a-001 protein_coding Danio_rerio 0 257
ENSDART00000081170 cux1a-201 protein_coding Danio_rerio 0 207
ENST00000261726 CUX2-001 protein_coding Homo_sapiens 0 2486
ENST00000292535 CUX1-004 protein_coding Homo_sapiens 0 196
ENST00000360264 CUX1-005 protein_coding Homo_sapiens 0 196
ENST00000546411 CUX1-008 protein_coding Homo_sapiens 0 196
ENST00000549414 CUX1-006 protein_coding Homo_sapiens 0 196
ENST00000550008 CUX1-007 protein_coding Homo_sapiens 0 196
ENST00000556210 CUX1-009 protein_coding Homo_sapiens 0 196

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