C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cut-like homeobox 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000261726 CUX2-001 ENSG00000111249 9606 + 12:111034024-111350554 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000261726
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000261726 0.011±0.00 0.033±0.00 0.030±0.00 1.841±0.27 0.049±0.03 0.090±0.00 0.020±0.00 0.016±0.00 0.047±0.00 0.016±0.00 0.023±0.01 0.044±0.01 0.449±0.14

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YU CIL_0008YU_0001 VISTA 12:110628804-111231731
CIL_000903 CIL_000903_0001 VISTA 12:110757593-111358448
CIL_0008TJ CIL_0008TJ_0001 VISTA 12:110911282-111513646

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 ISS RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0006351 IEA transcription, DNA-templated
GO:0007614 ISS short-term memory
GO:0010628 ISS positive regulation of gene expression
GO:0043565 IDA sequence-specific DNA binding
GO:0045892 IEA negative regulation of transcription, DNA-templated
GO:0050775 ISS positive regulation of dendrite morphogenesis
GO:0050890 IMP cognition
GO:0051965 ISS positive regulation of synapse assembly
GO:0061003 ISS positive regulation of dendritic spine morphogenesis
GO:0070062 IDA extracellular vesicular exosome
GO:0071310 IEA cellular response to organic substance
GO:2000463 ISS positive regulation of excitatory postsynaptic membrane potential

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000111752 Cux2-001 protein_coding Mus_musculus 0 2575
ENSMUST00000086317 Cux2-002 protein_coding Mus_musculus 0 2486
ENSMUST00000168288 Cux2-201 protein_coding Mus_musculus 0 2459
ENSDART00000142846 cux2b-202 protein_coding Danio_rerio 0 444
ENSDART00000135006 cux2b-001 protein_coding Danio_rerio 0 444
ENSMUST00000156942 Cux2-009 protein_coding Mus_musculus 0 337
ENSDART00000136245 cux1a-001 protein_coding Danio_rerio 0 285
ENSDART00000134378 cux2b-002 protein_coding Danio_rerio 7e-27 128
ENSDART00000129464 cux2b-201 protein_coding Danio_rerio 1e-24 121
ENSDART00000081170 cux1a-201 protein_coding Danio_rerio 3e-20 106
ENSMUST00000177305 Cux1-002 retained_intron Mus_musculus 0.00000000000001 88
ENSMUST00000176501 Cux1-007 retained_intron Mus_musculus 0.00000000000001 88
ENSMUST00000175975 Cux1-008 protein_coding Mus_musculus 0.00000000000001 88
ENSMUST00000004097 Cux1-001 protein_coding Mus_musculus 0.00000000000001 88
ENSMUST00000177297 Cux1-009 nonsense_mediated_decay Mus_musculus 0.00000000000001 88
ENSMUST00000175918 Cux1-003 nonsense_mediated_decay Mus_musculus 0.00000000000001 88
ENSMUST00000176745 Cux1-006 protein_coding Mus_musculus 0.00000000000001 88
ENSMUST00000176216 Cux1-004 protein_coding Mus_musculus 0.00000000000001 88

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