C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cut-like homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546411 CUX1-008 ENSG00000257923 9606 + 7:101817640-102249042 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FZ CIL_0002FZ_0002 CGP 7:101815904-102321711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000977 ISS RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003677 IEA DNA binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007275 TAS multicellular organismal development
GO:0043565 IDA sequence-specific DNA binding
GO:0050775 ISS positive regulation of dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176778 Cux1-005 protein_coding Mus_musculus 0 4244
ENSMUST00000004097 Cux1-001 protein_coding Mus_musculus 0 4237
ENSMUST00000176172 Cux1-011 protein_coding Mus_musculus 0 2748
ENSMUST00000176486 Cux1-012 protein_coding Mus_musculus 0 2748
ENSMUST00000175975 Cux1-008 protein_coding Mus_musculus 0 2163
ENSMUST00000177297 Cux1-009 nonsense_mediated_decay Mus_musculus 0 1493
ENSMUST00000176216 Cux1-004 protein_coding Mus_musculus 0 1493
ENSMUST00000176745 Cux1-006 protein_coding Mus_musculus 0 1454
ENSMUST00000163906 Cux1-010 processed_transcript Mus_musculus 0 1105
ENSMUST00000176501 Cux1-007 retained_intron Mus_musculus 0 654
ENSMUST00000175918 Cux1-003 nonsense_mediated_decay Mus_musculus 0 654
ENSMUST00000176423 Cux1-017 protein_coding Mus_musculus 0 532
ENSMUST00000175998 Cux1-013 protein_coding Mus_musculus 0 532
ENSDART00000136245 cux1a-001 protein_coding Danio_rerio 0 398
ENSDART00000142846 cux2b-202 protein_coding Danio_rerio 0 230
ENSDART00000135006 cux2b-001 protein_coding Danio_rerio 0 230
ENSDART00000081170 cux1a-201 protein_coding Danio_rerio 0 204
ENSMUST00000168288 Cux2-201 protein_coding Mus_musculus 0 196
ENSMUST00000086317 Cux2-002 protein_coding Mus_musculus 0 196
ENSMUST00000111752 Cux2-001 protein_coding Mus_musculus 0 196

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