C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cut-like homeobox 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000360264 CUX1-005 ENSG00000257923 9606 + 7:101816011-102258233 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000360264
Transcript ID Adipose Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000360264 1.548±0.00 2.723±0.00 2.378±0.04 1.955±0.00 1.149±0.00 0.504±0.00 2.037±0.00 1.765±0.00 3.493±2.33 3.775±1.54 3.510±2.41 1.753±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002FZ CIL_0002FZ_0002 CGP 7:101815904-102321711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000977 ISS RNA polymerase II regulatory region sequence-specific DNA binding
GO:0001205 IEA RNA polymerase II distal enhancer sequence-specific DNA binding transcription factor activity involved in positive regulation of transcription
GO:0001822 IEA kidney development
GO:0003677 IEA DNA binding
GO:0003682 IEA chromatin binding
GO:0005634 IDA nucleus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006351 IEA transcription, DNA-templated
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0007275 TAS multicellular organismal development
GO:0030324 IEA lung development
GO:0042491 IEA auditory receptor cell differentiation
GO:0043565 IDA sequence-specific DNA binding
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0050775 ISS positive regulation of dendrite morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176172 Cux1-011 protein_coding Mus_musculus 0 4691
ENSMUST00000176486 Cux1-012 protein_coding Mus_musculus 0 4276
ENSMUST00000176778 Cux1-005 protein_coding Mus_musculus 0 2748
ENSMUST00000004097 Cux1-001 protein_coding Mus_musculus 0 2748
ENSMUST00000175975 Cux1-008 protein_coding Mus_musculus 0 2501
ENSMUST00000177297 Cux1-009 nonsense_mediated_decay Mus_musculus 0 1644
ENSMUST00000176216 Cux1-004 protein_coding Mus_musculus 0 1622
ENSMUST00000176745 Cux1-006 protein_coding Mus_musculus 0 1605
ENSMUST00000163906 Cux1-010 processed_transcript Mus_musculus 0 1105
ENSMUST00000176501 Cux1-007 retained_intron Mus_musculus 0 789
ENSMUST00000175918 Cux1-003 nonsense_mediated_decay Mus_musculus 0 656
ENSMUST00000176423 Cux1-017 protein_coding Mus_musculus 0 641
ENSMUST00000175998 Cux1-013 protein_coding Mus_musculus 0 534
ENSDART00000136245 cux1a-001 protein_coding Danio_rerio 0 398
ENSMUST00000177305 Cux1-002 retained_intron Mus_musculus 0 289
ENSDART00000142846 cux2b-202 protein_coding Danio_rerio 0 230
ENSDART00000135006 cux2b-001 protein_coding Danio_rerio 0 230
ENSDART00000081170 cux1a-201 protein_coding Danio_rerio 0 204
ENSMUST00000168288 Cux2-201 protein_coding Mus_musculus 0 196
ENSMUST00000086317 Cux2-002 protein_coding Mus_musculus 0 196
ENSMUST00000111752 Cux2-001 protein_coding Mus_musculus 0 196
ENSDART00000129464 cux2b-201 protein_coding Danio_rerio 0.00000003 68
ENSDART00000134378 cux2b-002 protein_coding Danio_rerio 0.00000003 68

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