C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XVII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000086923 Col17a1-004 ENSMUSG00000025064 10090 - 19:47646344-47692094 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000086923
Transcript ID Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000086923 0.011±0.01 0.557±0.08 0.152±0.05 2.729±0.55 0.052±0.01 0.103±0.07 0.053±0.02 0.047±0.01 1.324±0.00 0.059±0.03 0.144±0.06 0.148±0.10 0.311±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FI CIL_0006FI_0002 CGP 19:47579678-47692094
CIL_00095H CIL_00095H_0002 VISTA 19:47608459-48210596
CIL_0006FJ CIL_0006FJ_0002 CGP 19:47646344-47735588

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005581 IEA collagen trimer
GO:0005604 IEA basement membrane
GO:0016021 IEA integral component of membrane
GO:0030056 IDA hemidesmosome
GO:0031581 ISS hemidesmosome assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000353479 COL17A1-001 protein_coding Homo_sapiens 0 2627
ENST00000369733 COL17A1-003 protein_coding Homo_sapiens 0 2627
ENST00000393211 COL17A1-007 protein_coding Homo_sapiens 0 1258
ENST00000483876 COL17A1-004 retained_intron Homo_sapiens 0 231
ENST00000488320 COL17A1-005 retained_intron Homo_sapiens 0 329

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