C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: collagen, type XVII, alpha 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369733 COL17A1-003 ENSG00000065618 9606 - 10:104031286-104086002 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainColonHeartKidneyLiverOvaryENST00000369733
Transcript ID Adipose Bladder Brain Colon Heart Kidney Liver Ovary
ENST00000369733 0.089±0.00 0.060±0.00 0.162±0.00 1.912±1.52 0.052±0.00 0.073±0.00 0.842±0.00 1.065±1.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FI CIL_0006FI_0001 CGP 10:103967201-104086002
CIL_00095H CIL_00095H_0001 VISTA 10:104027242-104629417
CIL_0006FJ CIL_0006FJ_0001 CGP 10:104031286-104126385

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005576 TAS extracellular region
GO:0005581 IEA collagen trimer
GO:0005604 IEA basement membrane
GO:0005788 TAS endoplasmic reticulum lumen
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005911 TAS cell-cell junction
GO:0007160 TAS cell-matrix adhesion
GO:0008544 TAS epidermis development
GO:0022617 TAS extracellular matrix disassembly
GO:0030056 IDA hemidesmosome
GO:0030198 TAS extracellular matrix organization
GO:0030574 TAS collagen catabolic process
GO:0031581 IDA hemidesmosome assembly
GO:0034329 TAS cell junction assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000086923 Col17a1-004 protein_coding Mus_musculus 0 2627
ENSMUST00000026045 Col17a1-001 protein_coding Mus_musculus 0 2627
ENSMUST00000151102 Col17a1-003 processed_transcript Mus_musculus 0 436
ENSMUST00000145254 Col17a1-002 processed_transcript Mus_musculus 2e-36 156

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