C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006FI_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000065613-ENSG00000065618 CGP 9606 10:103967201-104086002
GeneTranscriptPositionBiotype
ENSG00000065613 (SLK)
STE20-like kinase 		ENST00000335753 (SLK-001) 103967201-104029233 protein_coding
ENST00000369755 (SLK-002) 103967201-104029233 protein_coding
ENST00000474260 (SLK-003) 104008198-104019116 processed_transcript
ENSG00000065618 (COL17A1)
collagen, type XVII, alpha 1 		ENST00000353479 (COL17A1-001) 104031286-104086002 protein_coding
ENST00000369733 (COL17A1-003) 104031286-104086002 protein_coding
ENST00000393211 (COL17A1-007) 104059317-104085778 protein_coding
ENST00000433822 (COL17A1-002) 104031288-104032968 protein_coding
ENST00000480127 (COL17A1-006) 104055176-104055975 processed_transcript
ENST00000483876 (COL17A1-004) 104070461-104080654 retained_intron
ENST00000488320 (COL17A1-005) 104059685-104064548 retained_intron
ENSG00000266754 (RN7SL524P)
RNA, 7SL, cytoplasmic 524, pseudogene 		ENST00000581152 (RN7SL524P-201) 103974515-103974814 misc_RNA
CIL_0006FI_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000025060-ENSMUSG00000025064 CGP 10090 19:47579678-47692094
GeneTranscriptPositionBiotype
ENSMUSG00000025060 (Slk)
STE20-like kinase 		ENSMUST00000026043 (Slk-001) 47579678-47645246 protein_coding
ENSMUST00000051691 (Slk-002) 47580019-47642455 protein_coding
ENSMUST00000123816 (Slk-003) 47620670-47625354 retained_intron
ENSMUST00000130115 (Slk-005) 47622658-47625854 retained_intron
ENSMUST00000147841 (Slk-004) 47635130-47636454 retained_intron
ENSMUSG00000025064 (Col17a1)
collagen, type XVII, alpha 1 		ENSMUST00000026045 (Col17a1-001) 47646344-47692094 protein_coding
ENSMUST00000086923 (Col17a1-004) 47646344-47692094 protein_coding
ENSMUST00000145254 (Col17a1-002) 47669283-47671048 processed_transcript
ENSMUST00000151102 (Col17a1-003) 47648100-47649595 processed_transcript
ENSMUSG00000086121 (Gm16068)
predicted gene 16068 		ENSMUST00000136557 (Gm16068-001) 47606144-47617106 antisense

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FI_0001ENSG00000065613ENST00000335753ENST00000369755ENST00000474260ENSG00000065618ENST00000353479ENST00000369733ENST00000393211ENST00000433822ENST00000480127ENST00000483876ENST00000488320ENSG00000266754ENST00000581152CIL_0006FI_0002ENSMUSG00000025060ENSMUST00000026043ENSMUST00000051691ENSMUST00000123816ENSMUST00000130115ENSMUST00000147841ENSMUSG00000025064ENSMUST00000026045ENSMUST00000086923ENSMUST00000145254ENSMUST00000151102ENSMUSG00000086121ENSMUST00000136557
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006FI_0001ENSG00000065613ENST00000335753ENST00000369755ENSG00000065618ENST00000353479ENST00000369733ENST00000393211ENST00000433822ENSG00000266754ENST00000581152CIL_0006FI_0002ENSMUSG00000025060ENSMUST00000026043ENSMUST00000051691ENSMUSG00000025064ENSMUST00000026045ENSMUST00000086923ENSMUST00000151102ENSMUSG00000086121ENSMUST00000136557
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000065613 ENST00000335753 12.210±0.00 6.987±0.00 0.751±0.00 6.474±1.63 5.766±0.30 7.243±4.25 5.824±2.73 2.157±0.71 6.038±5.27 8.534±1.14 4.977±3.70 6.953±1.35 5.223±2.49 9.529±1.67
ENST00000369755 N/A N/A 3.013±0.00 1.450±0.00 1.240±0.00 2.765±0.00 N/A 5.505±2.72 2.315±0.73 1.803±0.00 N/A 6.084±4.07 2.493±1.17 2.447±0.00
ENST00000474260 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000065618 ENST00000353479 0.187±0.00 0.309±0.00 N/A N/A 5.257±3.70 1.084±0.88 0.009±0.00 0.068±0.00 N/A 0.401±0.22 N/A 8.332±9.30 79.100±37.15 3.781±0.00
ENST00000369733 0.089±0.00 N/A 0.060±0.00 0.162±0.00 N/A 1.912±1.52 0.052±0.00 0.073±0.00 0.842±0.00 N/A N/A 1.065±1.03 N/A N/A
ENST00000393211 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.676±0.00 N/A N/A
ENST00000433822 N/A 0.501±0.00 N/A N/A N/A 0.876±0.00 N/A 0.469±0.00 0.057±0.00 N/A N/A 14.917±10.79 125.098±0.00 11.924±9.95
ENST00000480127 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000483876 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000488320 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000266754 ENST00000581152 0.697±0.00 1.718±0.00 1.206±0.00 0.481±0.28 1.627±1.39 1.832±1.27 0.234±0.08 0.500±0.00 N/A 1.332±1.26 0.485±0.00 0.354±0.15 0.276±0.00 0.566±0.03
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000025060 ENSMUST00000026043 5.092±2.90 N/A 16.421±0.95 6.660±1.28 2.823±1.23 9.040±0.45 5.546±2.73 2.167±0.27 9.396±4.08 10.430±4.50 5.231±0.80 8.416±1.86 8.383±2.86 1.642±0.74
ENSMUST00000051691 N/A N/A N/A 13.920±0.00 N/A N/A N/A N/A 2.496±0.65 N/A N/A 7.388±4.89 22.411±14.38 4.259±5.47
ENSMUST00000123816 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000130115 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000147841 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000025064 ENSMUST00000026045 0.151±0.01 0.013±0.00 1.124±0.07 0.346±0.07 4.813±2.12 0.078±0.02 0.084±0.06 0.125±0.00 0.045±0.02 2.197±1.13 0.144±0.11 0.182±0.08 0.050±0.01 0.530±0.06
ENSMUST00000086923 N/A 0.011±0.01 0.557±0.08 0.152±0.05 2.729±0.55 0.052±0.01 0.103±0.07 0.053±0.02 0.047±0.01 1.324±0.00 0.059±0.03 0.144±0.06 0.148±0.10 0.311±0.08
ENSMUST00000145254 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000151102 N/A 0.059±0.00 N/A N/A N/A 0.227±0.05 0.065±0.00 0.114±0.05 0.078±0.01 N/A N/A 0.564±0.19 N/A N/A
ENSMUSG00000086121 ENSMUST00000136557 N/A N/A 0.051±0.03 0.141±0.09 N/A 0.202±0.00 0.131±0.04 0.093±0.00 0.201±0.12 0.239±0.00 N/A N/A 0.140±0.01 0.151±0.05

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