C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Gene Info

Description: collagen, type XVII, alpha 1
Gene AccessionGene NameTax IDStrandPositionGene Biotype
ENSMUSG00000025064 Col17a1 10090 - 19:47646344-47692094 protein_coding
  Transcript Accession Transcript Name Position Transcript Biotype
  ENSMUST00000026045 Col17a1-001 47646344-47692094 protein_coding
  ENSMUST00000086923 Col17a1-004 47646344-47692094 protein_coding
  ENSMUST00000145254 Col17a1-002 47669283-47671048 processed_transcript
  ENSMUST00000151102 Col17a1-003 47648100-47649595 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000026045ENSMUST00000086923ENSMUST00000151102
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000026045 0.151±0.01 0.013±0.00 1.124±0.07 0.346±0.07 4.813±2.12 0.078±0.02 0.084±0.06 0.125±0.00 0.045±0.02 2.197±1.13 0.144±0.11 0.182±0.08 0.050±0.01 0.530±0.06
ENSMUST00000086923 N/A 0.011±0.01 0.557±0.08 0.152±0.05 2.729±0.55 0.052±0.01 0.103±0.07 0.053±0.02 0.047±0.01 1.324±0.00 0.059±0.03 0.144±0.06 0.148±0.10 0.311±0.08
ENSMUST00000151102 N/A 0.059±0.00 N/A N/A N/A 0.227±0.05 0.065±0.00 0.114±0.05 0.078±0.01 N/A N/A 0.564±0.19 N/A N/A

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006FI CIL_0006FI_0002 CGP 19:47579678-47692094
CIL_00095H CIL_00095H_0002 VISTA 19:47608459-48210596
CIL_0006FJ CIL_0006FJ_0002 CGP 19:47646344-47735588

Gene Ontology
GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005581 IEA collagen trimer
GO:0005604 IEA basement membrane
GO:0016021 IEA integral component of membrane
GO:0030056 IDA hemidesmosome
GO:0031581 ISS hemidesmosome assembly

Homologs

ENSEMBL Accession Gene Name Description Biotype Species
ENSDARG00000069415 col17a1a collagen, type XVII, alpha 1a protein_coding Danio_rerio
ENSDARG00000079011 col17a1b collagen, type XVII, alpha 1b protein_coding Danio_rerio
ENSG00000065618 COL17A1 collagen, type XVII, alpha 1 protein_coding Homo_sapiens

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