C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone cluster 1, H4j
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087714 Hist1h4j-001 ENSMUSG00000067455 10090 + 13:21735064-21735837 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087714
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087714 1.431±1.09 0.277±0.23 0.752±0.14 8.563±0.28 1.664±0.80 4.699±1.15 0.291±0.14 0.491±0.20 15.546±17.22 1.156±0.17 0.081±0.00 6.481±3.58 1.865±2.70 5.530±0.32

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00096D CIL_00096D_0002 VISTA 13:21673105-22276611
CIL_0000LH CIL_0000LH_0002 CGP 13:21722098-21735837

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000228 IEA nuclear chromosome
GO:0000786 ISS nucleosome
GO:0003677 ISS DNA binding
GO:0005515 IPI protein binding
GO:0005654 TAS nucleoplasm
GO:0006334 ISS nucleosome assembly
GO:0006335 IEA DNA replication-dependent nucleosome assembly
GO:0006336 IEA DNA replication-independent nucleosome assembly
GO:0016020 IEA membrane
GO:0043234 IEA protein complex
GO:0044822 IEA poly(A) RNA binding
GO:0045653 IEA negative regulation of megakaryocyte differentiation
GO:0046982 IEA protein heterodimerization activity
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000126439 protein_coding Danio_rerio 0 327
ENSDART00000128059 protein_coding Danio_rerio 0 311
ENSDART00000112685 si:ch211-113a14.10-201 protein_coding Danio_rerio 0 300
ENST00000355057 HIST1H4J-001 protein_coding Homo_sapiens 0 409
ENST00000358064 HIST4H4-001 nonsense_mediated_decay Homo_sapiens 0 309
ENST00000377745 HIST1H4B-001 protein_coding Homo_sapiens 0 267
ENST00000539745 HIST4H4-002 protein_coding Homo_sapiens 0 309
ENST00000578186 HIST2H4A-004 protein_coding Homo_sapiens 0 361
ENST00000579512 HIST2H4B-004 protein_coding Homo_sapiens 0 361
ENST00000611927 HIST1H4K-001 protein_coding Homo_sapiens 0 403
ENST00000612061 HIST2H4B-002 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000613412 HIST2H4A-002 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000614272 HIST2H4A-003 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000615353 HIST1H4I-001 protein_coding Homo_sapiens 0 381
ENST00000618193 HIST2H4A-001 nonsense_mediated_decay Homo_sapiens 0 361
ENST00000618305 HIST1H4L-001 protein_coding Homo_sapiens 0 340
ENST00000621520 HIST2H4B-003 nonsense_mediated_decay Homo_sapiens 0 361

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