C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histone deacetylase 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000087916 Hdac8-001 ENSMUSG00000067567 10090 - X:102284639-102505359 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000087916
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000087916 4.431±1.15 2.040±0.62 7.036±1.19 3.951±1.05 3.664±1.13 2.357±0.89 1.422±0.21 4.118±0.55 2.005±0.59 3.210±1.05 1.417±0.17 5.033±1.21 1.820±0.67 0.472±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006RM CIL_0006RM_0002 CGP X:102247381-102505359
CIL_0006RW CIL_0006RW_0002 CGP X:102284639-102644246

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000118 TAS histone deacetylase complex
GO:0004407 TAS histone deacetylase activity
GO:0005634 TAS nucleus
GO:0005737 TAS cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0007062 ISS sister chromatid cohesion
GO:0008134 TAS transcription factor binding
GO:0016568 TAS chromatin modification
GO:0032041 IEA NAD-dependent histone deacetylase activity (H3-K14 specific)
GO:0046872 IEA metal ion binding
GO:0046969 IEA NAD-dependent histone deacetylase activity (H3-K9 specific)
GO:0046970 IEA NAD-dependent histone deacetylase activity (H4-K16 specific)
GO:0070932 IEA histone H3 deacetylation
GO:0070933 IEA histone H4 deacetylation
GO:0071922 ISS regulation of cohesin localization to chromatin
GO:0097372 IEA NAD-dependent histone deacetylase activity (H3-K18 specific)

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000373554 HDAC8-005 protein_coding Homo_sapiens 0 569
ENST00000373556 HDAC8-003 protein_coding Homo_sapiens 0 558
ENST00000373559 HDAC8-008 protein_coding Homo_sapiens 0 195
ENST00000373560 HDAC8-007 protein_coding Homo_sapiens 0 553
ENST00000373568 HDAC8-006 protein_coding Homo_sapiens 0 780
ENST00000373571 HDAC8-004 protein_coding Homo_sapiens 0 992
ENST00000373573 HDAC8-001 protein_coding Homo_sapiens 0 1995
ENST00000373589 HDAC8-201 protein_coding Homo_sapiens 0 1288
ENST00000412342 HDAC8-013 nonsense_mediated_decay Homo_sapiens 0 710
ENST00000415409 HDAC8-012 protein_coding Homo_sapiens 0 736
ENST00000421523 HDAC8-009 protein_coding Homo_sapiens 0 571
ENST00000436675 HDAC8-017 nonsense_mediated_decay Homo_sapiens 0 771
ENST00000439122 HDAC8-002 protein_coding Homo_sapiens 0 1123
ENST00000444609 HDAC8-015 nonsense_mediated_decay Homo_sapiens 0 472
ENST00000470998 HDAC8-011 processed_transcript Homo_sapiens 0 359
ENST00000478743 HDAC8-016 processed_transcript Homo_sapiens 0 359

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