C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0006RW_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000147099-ENSG00000067177 CGP 9606 X:72329516-72714319
GeneTranscriptPositionBiotype
ENSG00000067177 (PHKA1)
phosphorylase kinase, alpha 1 (muscle) 		ENST00000339490 (PHKA1-201) 72578815-72714181 protein_coding
ENST00000373539 (PHKA1-003) 72580627-72714258 protein_coding
ENST00000373542 (PHKA1-001) 72578814-72714040 protein_coding
ENST00000373545 (PHKA1-002) 72578814-72714319 protein_coding
ENST00000541944 (PHKA1-202) 72578815-72714181 protein_coding
ENSG00000147099 (HDAC8)
histone deacetylase 8 		ENST00000373554 (HDAC8-005) 72567585-72572853 protein_coding
ENST00000373556 (HDAC8-003) 72567582-72572813 protein_coding
ENST00000373559 (HDAC8-008) 72474535-72572812 protein_coding
ENST00000373560 (HDAC8-007) 72474411-72572824 protein_coding
ENST00000373568 (HDAC8-006) 72351826-72573053 protein_coding
ENST00000373571 (HDAC8-004) 72466698-72572843 protein_coding
ENST00000373573 (HDAC8-001) 72329516-72573103 protein_coding
ENST00000373583 (HDAC8-010) 72329516-72572837 protein_coding
ENST00000373589 (HDAC8-201) 72329517-72573103 protein_coding
ENST00000412342 (HDAC8-013) 72464668-72572770 nonsense_mediated_decay
ENST00000415409 (HDAC8-012) 72462033-72572776 protein_coding
ENST00000421523 (HDAC8-009) 72495194-72572627 protein_coding
ENST00000436675 (HDAC8-017) 72462011-72572858 nonsense_mediated_decay
ENST00000439122 (HDAC8-002) 72473416-72573048 protein_coding
ENST00000444609 (HDAC8-015) 72568755-72573079 nonsense_mediated_decay
ENST00000470998 (HDAC8-011) 72330832-72462444 processed_transcript
ENST00000478743 (HDAC8-016) 72490934-72572843 processed_transcript
ENST00000486704 (HDAC8-014) 72571946-72572816 retained_intron
ENSG00000222810 (RNU2-68P)
RNA, U2 small nuclear 68, pseudogene 		ENST00000410878 (RNU2-68P-201) 72376979-72377169 snRNA
ENSG00000225858 (RP1-172N19.3)
 ENST00000417774 (RP1-172N19.3-001) 72660470-72660719 processed_pseudogene
ENSG00000231944 (PHKA1-AS1)
PHKA1 antisense RNA 1 		ENST00000420998 (PHKA1-AS1-001) 72688950-72712348 antisense
CIL_0006RW_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000067567-ENSMUSG00000034055 CGP 10090 X:102284639-102644246
GeneTranscriptPositionBiotype
ENSMUSG00000034055 (Phka1)
phosphorylase kinase alpha 1 		ENSMUST00000043596 (Phka1-002) 102513975-102644246 protein_coding
ENSMUST00000052012 (Phka1-001) 102513975-102644246 protein_coding
ENSMUST00000113611 (Phka1-201) 102513975-102644246 protein_coding
ENSMUST00000119229 (Phka1-003) 102513975-102644246 protein_coding
ENSMUST00000120270 (Phka1-005) 102513975-102644246 protein_coding
ENSMUST00000122022 (Phka1-004) 102513975-102644246 protein_coding
ENSMUST00000142534 (Phka1-006) 102554779-102644246 retained_intron
ENSMUSG00000067567 (Hdac8)
histone deacetylase 8 		ENSMUST00000087916 (Hdac8-001) 102284639-102505359 protein_coding
ENSMUST00000137785 (Hdac8-002) 102414345-102505345 processed_transcript
ENSMUST00000148481 (Hdac8-003) 102407602-102505146 processed_transcript
ENSMUST00000154024 (Hdac8-005) 102498156-102504741 retained_intron
ENSMUST00000154872 (Hdac8-004) 102405647-102505081 nonsense_mediated_decay
ENSMUSG00000085568 (Gm14858)
predicted gene 14858 		ENSMUST00000138614 (Gm14858-001) 102252651-102257689 processed_transcript
ENSMUST00000144761 (Gm14858-002) 102252522-102365498 processed_transcript

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006RW_0001ENSG00000067177ENST00000339490ENST00000373539ENST00000373542ENST00000373545ENST00000541944ENSG00000147099ENST00000373554ENST00000373556ENST00000373559ENST00000373560ENST00000373568ENST00000373571ENST00000373573ENST00000373583ENST00000373589ENST00000412342ENST00000415409ENST00000421523ENST00000436675ENST00000439122ENST00000444609ENST00000470998ENST00000478743ENST00000486704ENSG00000222810ENST00000410878ENSG00000225858ENST00000417774ENSG00000231944ENST00000420998CIL_0006RW_0002ENSMUSG00000034055ENSMUST00000043596ENSMUST00000052012ENSMUST00000113611ENSMUST00000119229ENSMUST00000120270ENSMUST00000122022ENSMUST00000142534ENSMUSG00000067567ENSMUST00000087916ENSMUST00000137785ENSMUST00000148481ENSMUST00000154024ENSMUST00000154872ENSMUSG00000085568ENSMUST00000138614ENSMUST00000144761
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0006RW_0001ENSG00000067177ENST00000339490ENST00000373539ENST00000373542ENST00000373545ENST00000541944ENSG00000147099ENST00000373554ENST00000373556ENST00000373559ENST00000373568ENST00000373571ENST00000373573ENST00000373583ENST00000373589ENST00000412342ENST00000415409ENST00000436675ENST00000439122ENST00000444609ENSG00000222810ENST00000410878ENSG00000225858ENST00000417774ENSG00000231944ENST00000420998CIL_0006RW_0002ENSMUSG00000034055ENSMUST00000043596ENSMUST00000052012ENSMUST00000113611ENSMUST00000119229ENSMUST00000120270ENSMUST00000142534ENSMUSG00000067567ENSMUST00000087916ENSMUST00000137785ENSMUST00000148481ENSMUST00000154024ENSMUST00000154872ENSMUSG00000085568ENSMUST00000138614ENSMUST00000144761
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000067177 ENST00000339490 N/A N/A N/A 1.649±0.00 N/A 0.854±0.00 N/A 0.358±0.00 0.118±0.00 N/A N/A 1.590±0.20 0.321±0.06 0.553±0.00
ENST00000373539 1.130±0.00 0.351±0.00 0.461±0.00 0.958±0.00 0.507±0.00 0.567±0.00 0.920±0.34 0.672±0.20 0.266±0.00 0.561±0.26 14.978±7.88 1.287±0.81 0.660±0.16 N/A
ENST00000373542 N/A 0.129±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.123±0.00 N/A
ENST00000373545 N/A N/A N/A N/A N/A N/A 0.396±0.00 N/A N/A N/A N/A N/A 0.177±0.00 N/A
ENST00000541944 0.156±0.00 0.806±0.00 N/A N/A 0.501±0.09 N/A 1.150±0.76 0.324±0.15 N/A 0.848±0.00 5.315±0.00 2.806±2.53 0.700±0.00 1.289±0.07
ENSG00000147099 ENST00000373554 N/A N/A N/A N/A N/A N/A N/A N/A 1.970±0.00 N/A N/A N/A N/A N/A
ENST00000373556 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.851±0.00 N/A N/A N/A
ENST00000373559 N/A N/A N/A N/A N/A N/A N/A 5.252±0.00 N/A N/A 1.510±0.00 N/A N/A N/A
ENST00000373560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373568 N/A N/A 1.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000373571 N/A N/A 1.120±0.00 N/A N/A N/A 0.406±0.00 1.271±0.00 N/A N/A N/A 1.621±0.00 N/A N/A
ENST00000373573 1.896±0.00 0.938±0.00 N/A 2.499±0.18 0.979±0.00 N/A 3.033±0.00 1.717±0.00 N/A 0.464±0.00 N/A 2.526±1.37 2.228±1.13 0.983±0.56
ENST00000373583 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.598±0.00 N/A N/A N/A
ENST00000373589 N/A N/A N/A N/A N/A 1.316±0.00 N/A 3.099±0.00 N/A N/A N/A 3.673±0.00 N/A 1.345±0.00
ENST00000412342 N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.444±0.00 1.446±0.00 N/A N/A N/A
ENST00000415409 N/A N/A N/A N/A 1.328±0.00 N/A N/A N/A N/A N/A N/A N/A 1.991±0.00 N/A
ENST00000421523 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000436675 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.893±0.00 N/A N/A N/A
ENST00000439122 1.062±0.00 2.149±0.00 N/A 1.559±0.00 0.953±0.24 N/A 0.461±0.09 0.737±0.00 0.595±0.26 0.992±0.48 N/A 1.146±0.26 0.896±0.40 0.721±0.00
ENST00000444609 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.809±0.00 N/A N/A N/A
ENST00000470998 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000478743 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000486704 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000222810 ENST00000410878 0.140±0.00 0.407±0.00 N/A 1.309±0.00 15.662±0.00 N/A N/A 0.595±0.00 0.115±0.00 0.987±0.00 N/A 1.377±0.00 N/A N/A
ENSG00000225858 ENST00000417774 N/A N/A N/A 0.045±0.00 N/A N/A N/A N/A 0.039±0.00 N/A N/A N/A N/A N/A
ENSG00000231944 ENST00000420998 N/A 0.062±0.00 N/A N/A N/A N/A N/A N/A 0.088±0.00 N/A 0.126±0.00 N/A 0.035±0.00 0.089±0.02
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000034055 ENSMUST00000043596 N/A 3.136±1.14 N/A 1.052±0.00 4.778±1.91 1.343±0.24 5.324±0.88 0.420±0.00 N/A 1.080±0.28 42.444±7.86 3.220±0.52 0.427±0.00 N/A
ENSMUST00000052012 3.090±0.43 2.407±1.18 3.984±0.48 1.996±0.49 6.405±4.69 1.865±0.97 1.468±0.08 2.166±0.63 0.823±0.37 5.017±0.44 50.934±22.97 3.547±1.64 1.577±0.17 1.305±0.51
ENSMUST00000113611 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.404±0.00
ENSMUST00000119229 0.642±0.00 1.611±0.82 N/A N/A 1.359±0.00 1.734±0.87 N/A 0.950±0.00 N/A N/A N/A 1.776±0.43 N/A 0.175±0.00
ENSMUST00000120270 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.799±0.00 N/A N/A
ENSMUST00000122022 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000142534 N/A 1.583±0.00 N/A N/A 1.792±0.00 1.001±0.00 N/A N/A 0.546±0.06 N/A N/A 3.282±0.41 N/A N/A
ENSMUSG00000067567 ENSMUST00000087916 4.431±1.15 2.040±0.62 7.036±1.19 3.951±1.05 3.664±1.13 2.357±0.89 1.422±0.21 4.118±0.55 2.005±0.59 3.210±1.05 1.417±0.17 5.033±1.21 1.820±0.67 0.472±0.00
ENSMUST00000137785 N/A 0.581±0.08 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148481 N/A 0.307±0.01 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000154024 N/A 0.984±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 3.639±0.02 N/A N/A
ENSMUST00000154872 N/A 0.966±0.00 N/A N/A N/A N/A N/A N/A 0.398±0.00 N/A N/A N/A N/A N/A
ENSMUSG00000085568 ENSMUST00000138614 N/A N/A N/A 0.026±0.00 0.069±0.00 N/A N/A N/A 0.037±0.00 N/A N/A 0.100±0.08 0.033±0.02 0.075±0.07
ENSMUST00000144761 N/A N/A N/A N/A 0.174±0.00 N/A N/A N/A 0.134±0.08 N/A N/A N/A 0.328±0.21 0.177±0.04

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