C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: laminin, alpha 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000092070 Lama3-001 ENSMUSG00000024421 10090 + 18:12333819-12583013 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000092070
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000092070 2.462±1.91 1.495±0.40 0.416±0.03 0.302±0.14 1.017±0.39 4.131±0.95 0.207±0.07 2.184±0.52 0.036±0.02 15.080±0.41 0.076±0.03 1.877±0.82 0.125±0.11 0.086±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AV CIL_0005AV_0002 CGP 18:12252362-12583013
CIL_0005WU CIL_0005WU_0002 CGP 18:12333819-12737050

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005102 IEA receptor binding
GO:0005576 TAS extracellular region
GO:0005604 IDA basement membrane
GO:0005606 IEA laminin-1 complex
GO:0005610 IDA laminin-5 complex
GO:0007155 IEA cell adhesion
GO:0030155 IEA regulation of cell adhesion
GO:0030334 IEA regulation of cell migration
GO:0035987 IEA endodermal cell differentiation
GO:0045995 IEA regulation of embryonic development
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000252999 LAMA5-001 protein_coding Homo_sapiens 0 231
ENST00000269217 LAMA3-002 protein_coding Homo_sapiens 0 4034
ENST00000313654 LAMA3-001 protein_coding Homo_sapiens 0 7993
ENST00000370677 LAMA5-003 processed_transcript Homo_sapiens 0 231
ENST00000399516 LAMA3-003 protein_coding Homo_sapiens 0 4743
ENST00000585600 LAMA3-005 non_stop_decay Homo_sapiens 0 1334
ENST00000586751 LAMA3-011 protein_coding Homo_sapiens 0 2872
ENST00000587184 LAMA3-004 protein_coding Homo_sapiens 0 3197
ENST00000588770 LAMA3-006 processed_transcript Homo_sapiens 0 3422
ENST00000591749 LAMA3-015 retained_intron Homo_sapiens 0 313
ENST00000616172 LAMA3-201 protein_coding Homo_sapiens 0 7965

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