C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: predicted pseudogene 5356
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093326 Gm5356-001 ENSMUSG00000069962 10090 - 8:89186946-89187560 processed_pseudogene

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastKidneyLiverMusclePlacentaENSMUST00000093326
Transcript ID Adipose Bladder Brain Breast Kidney Liver Muscle Placenta
ENSMUST00000093326 0.095±0.03 0.016±0.00 0.018±0.01 0.181±0.00 0.054±0.00 0.039±0.03 0.111±0.02 0.010±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007ON CIL_0007ON_0003 UCNEbase 8:88447800-92743752
CIL_00090M CIL_00090M_0002 VISTA 8:88602694-89203557
CIL_00090N CIL_00090N_0002 VISTA 8:88624827-89225618
CIL_0008AU CIL_0008AU_0002 VISTA 8:88639020-89240224
CIL_0008AT CIL_0008AT_0002 VISTA 8:88673175-89274114
CIL_0008AL CIL_0008AL_0002 VISTA 8:88691555-89292644
CIL_0007ZD CIL_0007ZD_0002 VISTA 8:88702204-89304697
CIL_0007WV CIL_0007WV_0002 VISTA 8:88705819-89307424
CIL_0008AK CIL_0008AK_0002 VISTA 8:88786387-89387574
CIL_0008AN CIL_0008AN_0002 VISTA 8:88940947-89542638
CIL_0007YA CIL_0007YA_0002 VISTA 8:89023884-89625178
CIL_0008AM CIL_0008AM_0002 VISTA 8:89071089-89671832
CIL_0008AP CIL_0008AP_0002 VISTA 8:89086847-89688302
CIL_0008AO CIL_0008AO_0002 VISTA 8:89154508-89755383
CIL_0008AR CIL_0008AR_0002 VISTA 8:89164933-89765803

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000022499 psmb3-001 protein_coding Danio_rerio 0 427
ENST00000457237 PSMB3P2-001 processed_pseudogene Homo_sapiens 0 643
ENST00000610434 PSMB3-006 protein_coding Homo_sapiens 0 575
ENST00000613870 PSMB3-002 nonsense_mediated_decay Homo_sapiens 0 420
ENST00000619426 PSMB3-001 protein_coding Homo_sapiens 0 776
ENST00000619951 PSMB3-201 protein_coding Homo_sapiens 0 776
ENST00000620309 PSMB3-003 nonsense_mediated_decay Homo_sapiens 0 420

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