C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: H2A histone family, member V
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093346 H2afv-002 ENSMUSG00000041126 10090 - 11:6428138-6444352 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainBreastHeartKidneyLiverMuscleOvaryPlacentaTestisENSMUST00000093346
Transcript ID Adipose Bladder Brain Breast Heart Kidney Liver Muscle Ovary Placenta Testis
ENSMUST00000093346 18.648±7.24 23.831±0.87 45.909±10.72 12.326±1.62 15.127±1.03 19.192±1.66 27.864±4.17 15.512±1.41 75.022±48.67 35.656±21.09 12.022±8.36

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000SB CIL_0000SB_0002 CGP 11:6415443-6444443
CIL_0007BS CIL_0007BS_0003 CGP 11:6427229-6475917

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000786 IEA nucleosome
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0008150 ND biological_process
GO:0046982 IEA protein heterodimerization activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000222690 H2AFV-001 protein_coding Homo_sapiens 2e-39 169
ENST00000308153 H2AFV-002 protein_coding Homo_sapiens 0 259
ENST00000349299 H2AFV-004 protein_coding Homo_sapiens 0 377
ENST00000350771 H2AFV-003 protein_coding Homo_sapiens 0 259
ENST00000437072 H2AFV-005 protein_coding Homo_sapiens 0 287
ENST00000446531 H2AFV-006 protein_coding Homo_sapiens 6e-40 169
ENST00000554246 RP11-386M24.4-001 transcribed_processed_pseudogene Homo_sapiens 0 198

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