C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: chloride channel 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000093490 Clcn3-001 ENSMUSG00000004319 10090 - 8:60910389-60983300 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000093490
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000093490 2.636±0.43 6.483±2.31 6.564±2.01 13.805±2.26 4.019±1.26 7.120±0.81 3.331±1.05 10.604±1.74 9.780±6.18 6.466±0.69 4.740±0.48 4.218±2.80 6.589±4.48 2.235±0.29

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005247 ISS voltage-gated chloride channel activity
GO:0005524 IEA ATP binding
GO:0005769 ISS early endosome
GO:0005770 ISS late endosome
GO:0005794 ISS Golgi apparatus
GO:0006821 IEA chloride transport
GO:0012506 ISS vesicle membrane
GO:0015297 IEA antiporter activity
GO:0016021 IEA integral component of membrane
GO:0030165 ISS PDZ domain binding
GO:0031410 IEA cytoplasmic vesicle
GO:0031902 TAS late endosome membrane
GO:0034220 IEA ion transmembrane transport
GO:0044070 IEA regulation of anion transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000347613 CLCN3-002 protein_coding Homo_sapiens 0 3157
ENST00000360642 CLCN3-004 protein_coding Homo_sapiens 0 2265
ENST00000423965 CLCN3P1-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 638
ENST00000504131 CLCN3-201 protein_coding Homo_sapiens 0 4218
ENST00000507875 CLCN3-005 protein_coding Homo_sapiens 0 3009
ENST00000511092 CLCN3-006 protein_coding Homo_sapiens 0 464
ENST00000512813 CLCN3-007 protein_coding Homo_sapiens 0 331
ENST00000513761 CLCN3-001 protein_coding Homo_sapiens 0 4217
ENST00000515420 CLCN3-009 protein_coding Homo_sapiens 0 817
ENST00000609203 CLCN3P1-002 processed_transcript Homo_sapiens 0 211
ENST00000613795 CLCN3-202 protein_coding Homo_sapiens 0 4218

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