C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000554514 ARHGEF40-006 ENSG00000165801 9606 + 14:21080897-21089545 retained_intron

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastLiverLungOvaryTestisENST00000554514
Transcript ID Brain Breast Liver Lung Ovary Testis
ENST00000554514 0.907±0.00 13.636±0.00 3.386±0.00 6.204±0.00 6.729±4.84 3.593±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TH CIL_0004TH_0001 CGP 14:20999255-21070872
CIL_00027R CIL_00027R_0001 CGP 14:21016763-21070872
CIL_0004Z0 CIL_0004Z0_0002 CGP 14:21070270-21104722

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182061 Arhgef40-006 protein_coding Mus_musculus 0 1901
ENSMUST00000182760 Arhgef40-007 protein_coding Mus_musculus 0 1901
ENSMUST00000182909 Arhgef40-003 protein_coding Mus_musculus 0 1901
ENSMUST00000183208 Arhgef40-008 nonsense_mediated_decay Mus_musculus 0 1901
ENSMUST00000100639 Arhgef40-005 protein_coding Mus_musculus 0 1901
ENSMUST00000093813 Arhgef40-001 protein_coding Mus_musculus 0 1901
ENSMUST00000182905 Arhgef40-004 nonsense_mediated_decay Mus_musculus 0 1033
ENSMUST00000182644 Arhgef40-010 retained_intron Mus_musculus 0 1005
ENSMUST00000182931 Arhgef40-020 retained_intron Mus_musculus 0 617
ENSMUST00000182217 Arhgef40-021 protein_coding Mus_musculus 0 455
ENSMUST00000182412 Arhgef40-017 nonsense_mediated_decay Mus_musculus 0 424
ENSMUST00000182667 Arhgef40-024 protein_coding Mus_musculus 0 407
ENSMUST00000182504 Arhgef40-026 retained_intron Mus_musculus 0 394
ENSMUST00000183022 Arhgef40-019 retained_intron Mus_musculus 0 337
ENSMUST00000182828 Arhgef40-025 protein_coding Mus_musculus 0 241
ENSMUST00000182777 Arhgef40-023 retained_intron Mus_musculus 0 233
ENSMUST00000183213 Arhgef40-022 retained_intron Mus_musculus 0 233

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