C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 40
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000298694 ARHGEF40-001 ENSG00000165801 9606 + 14:21070270-21090240 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENST00000298694
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENST00000298694 3.457±0.00 2.125±0.00 1.008±0.00 0.603±0.00 4.534±3.67 2.461±0.00 0.522±0.00 3.269±0.00 2.337±0.00 1.640±0.40 1.060±0.00 7.045±0.00 2.973±0.59

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004TH CIL_0004TH_0001 CGP 14:20999255-21070872
CIL_00027R CIL_00027R_0001 CGP 14:21016763-21070872
CIL_0004Z0 CIL_0004Z0_0002 CGP 14:21070270-21104722

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005737 IEA cytoplasm
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000182909 Arhgef40-003 protein_coding Mus_musculus 0 4796
ENSMUST00000093813 Arhgef40-001 protein_coding Mus_musculus 0 4704
ENSMUST00000182760 Arhgef40-007 protein_coding Mus_musculus 0 4643
ENSMUST00000100639 Arhgef40-005 protein_coding Mus_musculus 0 4255
ENSMUST00000182061 Arhgef40-006 protein_coding Mus_musculus 0 4213
ENSMUST00000182905 Arhgef40-004 nonsense_mediated_decay Mus_musculus 0 3384
ENSMUST00000183208 Arhgef40-008 nonsense_mediated_decay Mus_musculus 0 2782
ENSMUST00000182740 Arhgef40-002 retained_intron Mus_musculus 0 1478
ENSMUST00000182961 Arhgef40-009 retained_intron Mus_musculus 0 1267
ENSMUST00000182644 Arhgef40-010 retained_intron Mus_musculus 0 1009
ENSMUST00000182338 Arhgef40-013 nonsense_mediated_decay Mus_musculus 0 780
ENSMUST00000182412 Arhgef40-017 nonsense_mediated_decay Mus_musculus 0 715
ENSMUST00000182667 Arhgef40-024 protein_coding Mus_musculus 0 713
ENSMUST00000182217 Arhgef40-021 protein_coding Mus_musculus 0 457
ENSMUST00000182931 Arhgef40-020 retained_intron Mus_musculus 0 390
ENSMUST00000182193 Arhgef40-012 protein_coding Mus_musculus 0 361
ENSMUST00000182828 Arhgef40-025 protein_coding Mus_musculus 0 351
ENSMUST00000182019 Arhgef40-015 retained_intron Mus_musculus 0 350
ENSMUST00000183213 Arhgef40-022 retained_intron Mus_musculus 0 344
ENSMUST00000182480 Arhgef40-016 processed_transcript Mus_musculus 0 329
ENSMUST00000183022 Arhgef40-019 retained_intron Mus_musculus 0 285
ENSMUST00000067549 Zfp219-201 protein_coding Mus_musculus 0 255
ENSMUST00000166169 Zfp219-202 protein_coding Mus_musculus 0 244
ENSMUST00000182504 Arhgef40-026 retained_intron Mus_musculus 0 233
ENSMUST00000182777 Arhgef40-023 retained_intron Mus_musculus 0.0000000003 73

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