C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: NLR family, pyrin domain containing 1B
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094046 Nlrp1b-201 ENSMUSG00000070390 10090 - 11:71156000-71228467 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBreastColonHeartKidneyLiverLungMusclePlacentaTestisENSMUST00000094046
Transcript ID Adrenal Breast Colon Heart Kidney Liver Lung Muscle Placenta Testis
ENSMUST00000094046 0.076±0.04 0.105±0.02 0.147±0.00 0.026±0.01 0.033±0.01 0.077±0.04 0.126±0.08 0.026±0.00 0.020±0.00 0.068±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000N1 CIL_0000N1_0002 CGP 11:71153102-71789647

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0030163 IMP protein catabolic process
GO:0032610 IMP interleukin-1 alpha production
GO:0032611 IMP interleukin-1 beta production
GO:0042981 IEA regulation of apoptotic process
GO:0070269 IMP pyroptosis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262467 NLRP1-001 protein_coding Homo_sapiens 0 555
ENST00000269280 NLRP1-010 protein_coding Homo_sapiens 0 555
ENST00000345221 NLRP1-201 protein_coding Homo_sapiens 0 555
ENST00000354411 NLRP1-012 protein_coding Homo_sapiens 0 555
ENST00000544378 NLRP1-002 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000571307 NLRP1-007 processed_transcript Homo_sapiens 0 555
ENST00000571451 NLRP1-008 nonsense_mediated_decay Homo_sapiens 0 555
ENST00000572272 NLRP1-011 protein_coding Homo_sapiens 0 555
ENST00000577119 NLRP1-009 protein_coding Homo_sapiens 0 555
ENST00000613500 NLRP1-202 protein_coding Homo_sapiens 0 555
ENST00000617618 NLRP1-203 protein_coding Homo_sapiens 0 555
ENST00000619223 NLRP1-204 protein_coding Homo_sapiens 0 555

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