C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glutamate decarboxylase 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000094934 Gad1-001 ENSMUSG00000070880 10090 + 2:70562042-70602014 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyLungPlacentaTestisENSMUST00000094934
Transcript ID Adrenal Brain Breast Colon Kidney Lung Placenta Testis
ENSMUST00000094934 0.157±0.02 19.780±1.33 0.076±0.02 0.135±0.00 0.063±0.03 0.065±0.00 0.039±0.00 0.084±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003SB CIL_0003SB_0003 CGP 2:70508819-70602014

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004351 IEA glutamate decarboxylase activity
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0005938 IDA cell cortex
GO:0016831 IEA carboxy-lyase activity
GO:0019752 IEA carboxylic acid metabolic process
GO:0030170 IEA pyridoxal phosphate binding
GO:0030424 IDA axon
GO:0042136 IEA neurotransmitter biosynthetic process
GO:0043679 IDA axon terminus
GO:0044306 IDA neuron projection terminus
GO:0045202 IDA synapse
GO:0048786 IDA presynaptic active zone

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000267085 CSAD-004 protein_coding Homo_sapiens 0.00005 55
ENST00000344257 GAD1-002 protein_coding Homo_sapiens 0 900
ENST00000358196 GAD1-001 protein_coding Homo_sapiens 0 3421
ENST00000375272 GAD1-201 protein_coding Homo_sapiens 0 1024
ENST00000379846 CSAD-002 protein_coding Homo_sapiens 0.00004 55
ENST00000379850 CSAD-003 protein_coding Homo_sapiens 0.00004 55
ENST00000414527 GAD1-013 nonsense_mediated_decay Homo_sapiens 0 1465
ENST00000429023 GAD1-004 processed_transcript Homo_sapiens 0 824
ENST00000444623 CSAD-017 protein_coding Homo_sapiens 0.00004 55
ENST00000445006 GAD1-008 protein_coding Homo_sapiens 0 329
ENST00000453446 CSAD-019 protein_coding Homo_sapiens 0.00003 55
ENST00000454603 GAD1-007 protein_coding Homo_sapiens 0 337
ENST00000455008 GAD1-009 protein_coding Homo_sapiens 0 449
ENST00000456864 GAD1-010 protein_coding Homo_sapiens 0 466
ENST00000462739 GAD1-014 retained_intron Homo_sapiens 3e-40 169
ENST00000478562 GAD1-006 retained_intron Homo_sapiens 0 1502
ENST00000485013 GAD1-011 retained_intron Homo_sapiens 0 285
ENST00000486850 GAD1-015 protein_coding Homo_sapiens 0 298
ENST00000488724 GAD1-005 retained_intron Homo_sapiens 0 1116
ENST00000490589 CSAD-015 retained_intron Homo_sapiens 0.00001 55
ENST00000490923 CSAD-014 retained_intron Homo_sapiens 0.00002 55
ENST00000493270 GAD1-012 retained_intron Homo_sapiens 0 412
ENST00000493875 GAD1-003 nonsense_mediated_decay Homo_sapiens 0 1714
ENST00000548698 CSAD-020 protein_coding Homo_sapiens 0.000008 55

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