C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095044 St6galnac6-001 ENSMUSG00000026811 10090 + 2:32607026-32620806 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBreastKidneyLungMuscleOvaryPlacentaENSMUST00000095044
Transcript ID Adipose Adrenal Bladder Breast Kidney Lung Muscle Ovary Placenta
ENSMUST00000095044 6.220±0.00 12.156±3.79 2.278±1.01 4.751±1.27 1.738±0.00 4.948±1.58 5.119±0.93 5.536±0.53 0.510±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001574 IDA ganglioside biosynthetic process
GO:0001665 IDA alpha-N-acetylgalactosaminide alpha-2,6-sialyltransferase activity
GO:0005737 IDA cytoplasm
GO:0005794 IEA Golgi apparatus
GO:0006486 IEA protein glycosylation
GO:0006677 IEA glycosylceramide metabolic process
GO:0006687 IEA glycosphingolipid metabolic process
GO:0008373 IDA sialyltransferase activity
GO:0009100 IEA glycoprotein metabolic process
GO:0009312 IDA oligosaccharide biosynthetic process
GO:0009988 IC cell-cell recognition
GO:0016021 IEA integral component of membrane
GO:0097503 IDA:IEA sialylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000263671 CHRDL2-001 protein_coding Homo_sapiens 0.0001 53
ENST00000291839 ST6GALNAC6-201 protein_coding Homo_sapiens 0 1489
ENST00000373141 ST6GALNAC6-010 protein_coding Homo_sapiens 0 1441
ENST00000373142 ST6GALNAC6-006 protein_coding Homo_sapiens 0 1631
ENST00000373144 ST6GALNAC6-008 protein_coding Homo_sapiens 0 1441
ENST00000373146 ST6GALNAC6-007 protein_coding Homo_sapiens 0 1657
ENST00000447681 ST6GALNAC6-011 protein_coding Homo_sapiens 0 843
ENST00000463086 ST6GALNAC6-014 processed_transcript Homo_sapiens 0 335
ENST00000478319 ST6GALNAC6-004 processed_transcript Homo_sapiens 0 327
ENST00000480417 ST6GALNAC6-012 processed_transcript Homo_sapiens 0 699
ENST00000481355 ST6GALNAC6-001 processed_transcript Homo_sapiens 0 433
ENST00000485320 ST6GALNAC6-009 processed_transcript Homo_sapiens 0 1526
ENST00000494541 ST6GALNAC6-013 processed_transcript Homo_sapiens 0 525
ENST00000494611 ST6GALNAC6-005 processed_transcript Homo_sapiens 5e-23 111
ENST00000527755 HINFP-004 retained_intron Homo_sapiens 0.0002 53
ENST00000542456 ST6GALNAC6-202 protein_coding Homo_sapiens 0 603
ENST00000590054 CCDC159-003 retained_intron Homo_sapiens 0.000001 58
ENST00000622357 ST6GALNAC6-203 protein_coding Homo_sapiens 0 1441

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