C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: vesicle transport through interaction with t-SNAREs 1A
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000095950 Vti1a-201 ENSMUSG00000024983 10090 + 19:55316351-55626561 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000095950
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000095950 4.491±0.75 5.035±0.46 6.348±1.30 8.951±4.08 4.411±0.81 3.559±0.56 2.215±0.44 4.015±1.23 3.131±1.80 4.392±1.82 3.975±0.34 5.119±1.23 5.000±1.26 1.255±0.71

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00093P CIL_00093P_0002 VISTA 19:55176600-55777537
CIL_0006OV CIL_0006OV_0002 CGP 19:55298301-55626561
CIL_0006OU CIL_0006OU_0002 CGP 19:55316351-55933654

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005484 IEA SNAP receptor activity
GO:0005768 ISS endosome
GO:0005794 IEA Golgi apparatus
GO:0006886 IEA intracellular protein transport
GO:0006888 ISS ER to Golgi vesicle-mediated transport
GO:0008021 ISS synaptic vesicle
GO:0016021 IEA integral component of membrane
GO:0030136 ISS clathrin-coated vesicle
GO:0031201 ISS SNARE complex
GO:0042147 ISS retrograde transport, endosome to Golgi
GO:0043025 ISS neuronal cell body
GO:0044306 ISS neuron projection terminus
GO:0048280 ISS vesicle fusion with Golgi apparatus
GO:0048471 ISS perinuclear region of cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000393077 VTI1A-001 protein_coding Homo_sapiens 0 1098
ENST00000432306 VTI1A-009 protein_coding Homo_sapiens 0 741
ENST00000480057 VTI1A-006 processed_transcript Homo_sapiens 0 483
ENST00000489142 VTI1A-005 processed_transcript Homo_sapiens 0 355
ENST00000489357 VTI1A-007 processed_transcript Homo_sapiens 0 483
ENST00000494728 VTI1A-004 processed_transcript Homo_sapiens 0 355
ENST00000496445 VTI1A-008 processed_transcript Homo_sapiens 0 603

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