C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: establishment of cohesion 1 homolog 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097670 Esco1-002 ENSMUSG00000024293 10090 - 18:10566611-10610129 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderColonHeartKidneyLiverLungMusclePlacentaENSMUST00000097670
Transcript ID Adipose Bladder Colon Heart Kidney Liver Lung Muscle Placenta
ENSMUST00000097670 0.406±0.00 1.620±0.32 0.965±0.00 0.520±0.25 0.660±0.21 0.892±0.61 0.436±0.00 0.797±0.20 2.212±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005NU CIL_0005NU_0002 CGP 18:10325177-10610352
CIL_00084R CIL_00084R_0002 VISTA 18:10435381-11036621
CIL_0005CM CIL_0005CM_0002 CGP 18:10566602-10628230

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000785 IEA chromatin
GO:0003674 ND molecular_function
GO:0006275 IEA regulation of DNA replication
GO:0007062 IEA sister chromatid cohesion
GO:0034421 IEA post-translational protein acetylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000269214 ESCO1-001 protein_coding Homo_sapiens 0 1797
ENST00000383276 ESCO1-002 nonsense_mediated_decay Homo_sapiens 0 1485
ENST00000526316 RP11-313I2.6-001 processed_pseudogene Homo_sapiens 0 340
ENST00000527814 RP11-716D19.1-001 processed_pseudogene Homo_sapiens 0 326
ENST00000529105 CTD-2132H18.3-001 processed_pseudogene Homo_sapiens 0 363
ENST00000622333 ESCO1-201 protein_coding Homo_sapiens 0 1485

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