C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L27, pseudogene 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097682 Rpl27-ps3-201 ENSMUSG00000073640 10090 + 18:6332590-6333064 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000097682
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000097682 49.435±5.43 5.312±1.35 48.988±11.92 24.112±6.67 31.381±15.11 22.679±6.87 12.955±1.83 16.972±7.81 29.447±23.37 23.999±6.47 1.061±0.28 76.062±36.40 47.758±9.23 12.577±1.86

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005634 IEA nucleus
GO:0005840 IEA ribosome
GO:0005925 IEA focal adhesion
GO:0006412 IEA translation
GO:0016020 IEA membrane
GO:0022625 IEA cytosolic large ribosomal subunit
GO:0030529 IEA ribonucleoprotein complex
GO:0044822 IEA poly(A) RNA binding
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000253788 RPL27-001 protein_coding Homo_sapiens 0 564
ENST00000411843 AC096664.1-001 processed_pseudogene Homo_sapiens 0 446
ENST00000425821 RP4-604A21.1-001 processed_pseudogene Homo_sapiens 0 303
ENST00000427253 AC009362.2-001 processed_pseudogene Homo_sapiens 0 448
ENST00000441321 AC016691.2-001 processed_pseudogene Homo_sapiens 0 368
ENST00000468034 RP11-829H16.2-001 processed_pseudogene Homo_sapiens 0 424
ENST00000477507 CTD-2186M15.1-001 processed_pseudogene Homo_sapiens 0 431
ENST00000586277 RPL27-006 protein_coding Homo_sapiens 0 425
ENST00000588830 RPL27-007 nonsense_mediated_decay Homo_sapiens 0 195
ENST00000589037 RPL27-004 protein_coding Homo_sapiens 0 542
ENST00000589913 RPL27-003 protein_coding Homo_sapiens 0 538
ENST00000590864 RPL27-008 protein_coding Homo_sapiens 0 424
ENST00000593262 RPL27-002 retained_intron Homo_sapiens 0 424

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