C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: phosphoinositide kinase, FYVE finger containing
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000097707 Pikfyve-006 ENSMUSG00000025949 10090 + 1:65186750-65274012 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastHeartKidneyLiverOvaryPlacentaTestisENSMUST00000097707
Transcript ID Adipose Breast Heart Kidney Liver Ovary Placenta Testis
ENSMUST00000097707 1.568±0.39 1.600±1.22 0.554±0.19 0.649±0.00 0.577±0.13 1.790±0.48 1.393±0.15 0.873±0.22

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00014C CIL_00014C_0002 CGP 1:65158616-65278695
CIL_0006P3 CIL_0006P3_0002 CGP 1:65186683-65389244

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000139 TAS Golgi membrane
GO:0000285 TAS 1-phosphatidylinositol-3-phosphate 5-kinase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005829 IDA cytosol
GO:0005911 IDA cell-cell junction
GO:0008270 IDA zinc ion binding
GO:0012506 IDA vesicle membrane
GO:0016308 IDA 1-phosphatidylinositol-4-phosphate 5-kinase activity
GO:0031410 IDA cytoplasmic vesicle
GO:0031901 TAS early endosome membrane
GO:0031902 TAS late endosome membrane
GO:0032288 IGI myelin assembly
GO:0035556 IDA intracellular signal transduction
GO:0044267 IEA cellular protein metabolic process
GO:0046854 IEA phosphatidylinositol phosphorylation
GO:0048471 IDA perinuclear region of cytoplasm
GO:0052810 TAS 1-phosphatidylinositol-5-kinase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264380 PIKFYVE-001 protein_coding Homo_sapiens 0 8305
ENST00000308862 PIKFYVE-005 protein_coding Homo_sapiens 0 1520
ENST00000392202 PIKFYVE-002 protein_coding Homo_sapiens 0 1517
ENST00000407449 PIKFYVE-004 protein_coding Homo_sapiens 0 2357
ENST00000422495 PIKFYVE-009 protein_coding Homo_sapiens 0 536
ENST00000443896 PIKFYVE-003 nonsense_mediated_decay Homo_sapiens 0 3544
ENST00000452564 PIKFYVE-006 protein_coding Homo_sapiens 0 3339
ENST00000474721 PIKFYVE-008 processed_transcript Homo_sapiens 0 479
ENST00000477200 PIKFYVE-007 retained_intron Homo_sapiens 0 569

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