C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098062 Rbbp6-005 ENSMUSG00000030779 10090 + 7:122970700-122980181 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBladderBrainHeartKidneyLiverMuscleOvaryPlacentaENSMUST00000098062
Transcript ID Adipose Bladder Brain Heart Kidney Liver Muscle Ovary Placenta
ENSMUST00000098062 3.929±0.00 5.658±0.00 19.080±0.00 2.612±0.88 2.371±0.26 3.306±0.16 2.272±0.19 7.639±0.00 4.842±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VB CIL_0003VB_0003 CGP 7:122670492-123002557
CIL_0003V8 CIL_0003V8_0003 CGP 7:122965686-123195288

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IMP in utero embryonic development
GO:0004842 ISS ubiquitin-protein transferase activity
GO:0005634 IEA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008270 IEA zinc ion binding
GO:0016874 IEA ligase activity
GO:0035264 IMP multicellular organism growth
GO:0042787 ISS protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0048568 IGI embryonic organ development
GO:0061053 IMP somite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000319715 RBBP6-001 protein_coding Homo_sapiens 0 734
ENST00000348022 RBBP6-002 protein_coding Homo_sapiens 0 475
ENST00000381039 RBBP6-005 protein_coding Homo_sapiens 0 566
ENST00000452655 RBBP6-003 protein_coding Homo_sapiens 0 1013
ENST00000567686 RBBP6-007 protein_coding Homo_sapiens 0 425
ENST00000568015 RBBP6-009 protein_coding Homo_sapiens 0 425

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