C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003VB_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSDARG00000076401-ENSDARG00000037919 CGP 7955 3:35383374-35506490
GeneTranscriptPositionBiotype
ENSDARG00000076401 (cacng3b)
calcium channel, voltage-dependent, gamma subunit 3b 		ENSDART00000110126 (cacng3b-001) 35383374-35461274 protein_coding
CIL_0003VB_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000006116-ENSG00000122257 CGP 9606 16:24255553-24572863
GeneTranscriptPositionBiotype
ENSG00000006116 (CACNG3)
calcium channel, voltage-dependent, gamma subunit 3 		ENST00000005284 (CACNG3-001) 24255553-24362801 protein_coding
ENSG00000122257 (RBBP6)
retinoblastoma binding protein 6 		ENST00000319715 (RBBP6-001) 24540195-24572863 protein_coding
ENST00000348022 (RBBP6-002) 24540583-24572863 protein_coding
ENST00000381039 (RBBP6-005) 24540520-24572863 protein_coding
ENST00000452655 (RBBP6-003) 24540496-24549401 protein_coding
ENST00000562430 (RBBP6-004) 24554477-24572860 retained_intron
ENST00000562683 (RBBP6-010) 24555830-24559805 protein_coding
ENST00000564314 (RBBP6-006) 24537693-24570113 protein_coding
ENST00000564726 (RBBP6-008) 24553256-24556333 retained_intron
ENST00000567686 (RBBP6-007) 24537712-24561665 protein_coding
ENST00000568015 (RBBP6-009) 24539556-24555859 protein_coding
ENST00000568316 (RBBP6-012) 24539585-24540284 retained_intron
ENST00000570185 (RBBP6-011) 24563280-24567370 retained_intron
ENST00000613729 (RBBP6-013) 24552993-24554938 processed_transcript
ENSG00000260072 (CTD-2313J23.1)
 ENST00000566929 (CTD-2313J23.1-001) 24472798-24495177 lincRNA
ENSG00000264465 (AC008938.1)
 ENST00000579240 (AC008938.1-201) 24438988-24439087 miRNA
CIL_0003VB_0003 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000066189-ENSMUSG00000030779 CGP 10090 7:122670492-123002557
GeneTranscriptPositionBiotype
ENSMUSG00000030779 (Rbbp6)
retinoblastoma binding protein 6 		ENSMUST00000052135 (Rbbp6-001) 122970564-123002557 protein_coding
ENSMUST00000071590 (Rbbp6-002) 122970918-123002557 protein_coding
ENSMUST00000098062 (Rbbp6-005) 122970700-122980181 protein_coding
ENSMUST00000126053 (Rbbp6-009) 122990130-122992512 retained_intron
ENSMUST00000137860 (Rbbp6-007) 122975640-122978761 retained_intron
ENSMUST00000148880 (Rbbp6-006) 122965686-122976008 protein_coding
ENSMUST00000156738 (Rbbp6-008) 122982542-122985702 retained_intron
ENSMUSG00000066189 (Cacng3)
calcium channel, voltage-dependent, gamma subunit 3 		ENSMUST00000084615 (Cacng3-001) 122670492-122769393 protein_coding
ENSMUST00000182095 (Cacng3-003) 122671418-122768540 protein_coding
ENSMUST00000182563 (Cacng3-002) 122671391-122768421 protein_coding

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VB_0001ENSDARG00000076401ENSDART00000110126CIL_0003VB_0002ENSG00000006116ENST00000005284ENSG00000122257ENST00000319715ENST00000348022ENST00000381039ENST00000452655ENST00000562430ENST00000562683ENST00000564314ENST00000564726ENST00000567686ENST00000568015ENST00000568316ENST00000570185ENST00000613729ENSG00000260072ENST00000566929ENSG00000264465ENST00000579240CIL_0003VB_0003ENSMUSG00000030779ENSMUST00000052135ENSMUST00000071590ENSMUST00000098062ENSMUST00000126053ENSMUST00000137860ENSMUST00000148880ENSMUST00000156738ENSMUSG00000066189ENSMUST00000084615ENSMUST00000182095ENSMUST00000182563
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003VB_0001ENSDARG00000076401ENSDART00000110126CIL_0003VB_0002ENSG00000006116ENST00000005284ENSG00000122257ENST00000319715ENST00000348022ENST00000381039ENST00000452655ENST00000562430ENST00000564314ENST00000568015ENST00000613729ENSG00000260072ENST00000566929ENSG00000264465ENST00000579240CIL_0003VB_0003ENSMUSG00000030779ENSMUST00000052135ENSMUST00000071590ENSMUST00000098062ENSMUSG00000066189ENSMUST00000084615ENSMUST00000182095ENSMUST00000182563
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSDARG00000076401 ENSDART00000110126 N/A N/A N/A 7.522±3.90 N/A N/A 0.013±0.00 0.142±0.09 N/A N/A 0.554±0.00 N/A N/A N/A
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000006116 ENST00000005284 N/A N/A 0.019±0.00 13.771±2.46 N/A N/A 0.006±0.00 N/A 0.041±0.00 N/A N/A N/A N/A 0.160±0.00
ENSG00000122257 ENST00000319715 3.437±0.00 3.998±0.00 0.863±0.00 2.998±0.00 0.765±0.00 1.442±0.00 2.018±1.84 1.550±1.01 1.648±0.82 0.921±0.21 1.887±0.00 2.969±1.51 2.666±0.79 9.736±4.65
ENST00000348022 N/A N/A N/A 0.449±0.00 1.314±0.02 1.838±0.64 N/A 3.963±0.00 N/A N/A 2.062±0.00 2.976±0.00 N/A 3.136±0.00
ENST00000381039 N/A N/A N/A N/A N/A N/A N/A 1.812±0.00 N/A N/A N/A 9.099±0.00 12.864±0.00 10.313±7.28
ENST00000452655 N/A N/A N/A N/A N/A N/A N/A N/A 5.821±0.00 N/A 3.002±0.00 N/A N/A N/A
ENST00000562430 N/A N/A N/A N/A 0.968±0.00 N/A 0.108±0.00 0.288±0.00 0.476±0.00 N/A N/A N/A N/A N/A
ENST00000562683 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000564314 N/A N/A N/A N/A N/A N/A 0.516±0.00 N/A N/A N/A N/A N/A N/A N/A
ENST00000564726 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000567686 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000568015 N/A N/A N/A N/A N/A N/A N/A N/A N/A 5.764±0.00 3.801±0.00 N/A N/A N/A
ENST00000568316 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000570185 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENST00000613729 N/A N/A N/A N/A N/A N/A N/A N/A N/A 2.627±0.00 N/A 3.479±0.00 1.684±0.00 N/A
ENSG00000260072 ENST00000566929 0.065±0.00 0.167±0.00 N/A 0.104±0.00 0.074±0.00 0.047±0.00 0.040±0.00 0.052±0.03 0.018±0.00 0.075±0.00 0.028±0.00 0.020±0.01 0.031±0.03 0.149±0.03
ENSG00000264465 ENST00000579240 N/A 0.989±0.00 N/A N/A N/A N/A N/A 0.249±0.00 N/A N/A N/A N/A N/A 0.227±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000030779 ENSMUST00000052135 2.944±2.20 8.818±3.90 2.344±0.92 7.137±2.97 3.318±1.89 4.682±0.85 2.395±0.23 2.982±1.08 3.180±0.75 2.418±0.40 2.709±0.70 7.493±1.40 10.690±5.65 20.594±0.00
ENSMUST00000071590 2.064±1.59 N/A 2.478±0.00 5.632±1.64 1.651±0.34 2.490±0.22 0.532±0.06 1.652±0.90 2.497±1.66 2.428±0.21 0.688±0.16 6.316±1.48 9.433±5.16 N/A
ENSMUST00000098062 3.929±0.00 N/A 5.658±0.00 19.080±0.00 N/A N/A 2.612±0.88 2.371±0.26 3.306±0.16 N/A 2.272±0.19 7.639±0.00 4.842±0.00 N/A
ENSMUST00000126053 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000137860 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000148880 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156738 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000066189 ENSMUST00000084615 N/A 0.154±0.02 0.009±0.00 5.630±4.45 0.035±0.02 0.024±0.01 N/A 0.024±0.00 0.015±0.00 N/A 0.025±0.00 0.033±0.00 0.059±0.06 0.009±0.00
ENSMUST00000182095 N/A N/A 0.004±0.00 54.313±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000182563 N/A N/A N/A 30.312±0.00 0.027±0.00 N/A N/A N/A 0.017±0.00 N/A N/A N/A N/A N/A

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