C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: retinoblastoma binding protein 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000319715 RBBP6-001 ENSG00000122257 9606 + 16:24540195-24572863 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000319715
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000319715 3.437±0.00 3.998±0.00 0.863±0.00 2.998±0.00 0.765±0.00 1.442±0.00 2.018±1.84 1.550±1.01 1.648±0.82 0.921±0.21 1.887±0.00 2.969±1.51 2.666±0.79 9.736±4.65

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003VB CIL_0003VB_0002 CGP 16:24255553-24572863
CIL_0003V8 CIL_0003V8_0002 CGP 16:24537693-24827632

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001701 IEA in utero embryonic development
GO:0003676 IEA nucleic acid binding
GO:0004842 IDA:IEA ubiquitin-protein transferase activity
GO:0005515 IPI:IEA protein binding
GO:0005634 IEA:IDA nucleus
GO:0005694 IEA chromosome
GO:0005737 IEA cytoplasm
GO:0005856 IEA cytoskeleton
GO:0008270 IEA zinc ion binding
GO:0016567 IEA protein ubiquitination
GO:0016874 IEA ligase activity
GO:0035264 IEA multicellular organism growth
GO:0042787 IDA protein ubiquitination involved in ubiquitin-dependent protein catabolic process
GO:0044822 IDA poly(A) RNA binding
GO:0048568 IEA embryonic organ development
GO:0061053 IEA somite development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000052135 Rbbp6-001 protein_coding Mus_musculus 0 6785
ENSMUST00000071590 Rbbp6-002 protein_coding Mus_musculus 0 3419
ENSMUST00000098062 Rbbp6-005 protein_coding Mus_musculus 0 734
ENSMUST00000116315 Gm14385-001 processed_pseudogene Mus_musculus 0 597
ENSMUST00000126053 Rbbp6-009 retained_intron Mus_musculus 0 575
ENSMUST00000156738 Rbbp6-008 retained_intron Mus_musculus 0 420
ENSMUST00000137860 Rbbp6-007 retained_intron Mus_musculus 1.99965e-42 180

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