C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: CCR4-NOT transcription complex, subunit 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098473 Cnot1-202 ENSMUSG00000036550 10090 - 8:95719451-95807462 protein_coding

Mus musculus EnsemblGRCm38

Genome
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Genes
Structures from Ensembl
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Transcripts
Structures from Ensembl
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Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098473
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098473 4.606±0.95 2.704±1.12 4.790±0.96 8.028±6.20 5.226±1.27 5.945±3.10 3.010±0.66 5.142±1.67 4.371±2.17 3.871±0.95 3.552±1.70 8.104±6.33 16.131±5.69 12.543±3.55

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008Z0 CIL_0008Z0_0002 VISTA 8:95126508-95728314
CIL_0004IZ CIL_0004IZ_0002 CGP 8:95715915-95807462

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 ISS negative regulation of transcription from RNA polymerase II promoter
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0001829 IMP trophectodermal cell differentiation
GO:0005515 IPI protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006417 IEA regulation of translation
GO:0010606 ISS positive regulation of cytoplasmic mRNA processing body assembly
GO:0030014 ISS CCR4-NOT complex
GO:0030331 ISS estrogen receptor binding
GO:0031047 IEA gene silencing by RNA
GO:0033147 ISS negative regulation of intracellular estrogen receptor signaling pathway
GO:0042974 ISS retinoic acid receptor binding
GO:0048387 ISS negative regulation of retinoic acid receptor signaling pathway
GO:0060213 ISS positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
GO:1900153 ISS positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:2000036 IMP regulation of stem cell maintenance

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125459 cnot1-001 protein_coding Danio_rerio 0 2940
ENSDART00000017536 cnot1-201 protein_coding Danio_rerio 0 2931
ENSDART00000141311 cnot1-002 protein_coding Danio_rerio 0 475
ENST00000245138 CNOT1-201 protein_coding Homo_sapiens 0 1989
ENST00000317147 CNOT1-001 protein_coding Homo_sapiens 0 10870
ENST00000394266 SETD6-006 protein_coding Homo_sapiens 0 331
ENST00000441024 CNOT1-002 protein_coding Homo_sapiens 0 6852
ENST00000562046 CNOT1-022 protein_coding Homo_sapiens 0 438
ENST00000563130 CNOT1-004 retained_intron Homo_sapiens 0 1954
ENST00000563283 CNOT1-012 retained_intron Homo_sapiens 0 586
ENST00000564557 CNOT1-010 protein_coding Homo_sapiens 0 627
ENST00000565605 CNOT1-020 nonsense_mediated_decay Homo_sapiens 0 900
ENST00000565697 CNOT1-007 protein_coding Homo_sapiens 0 427
ENST00000566240 CNOT1-018 nonsense_mediated_decay Homo_sapiens 0 307
ENST00000567133 CNOT1-017 protein_coding Homo_sapiens 0 660
ENST00000567188 CNOT1-005 nonsense_mediated_decay Homo_sapiens 0 9605
ENST00000567285 CNOT1-016 protein_coding Homo_sapiens 0 752
ENST00000568158 CNOT1-009 processed_transcript Homo_sapiens 0 220
ENST00000568917 CNOT1-019 protein_coding Homo_sapiens 0 1736
ENST00000569020 CNOT1-008 protein_coding Homo_sapiens 0 420
ENST00000569240 CNOT1-003 protein_coding Homo_sapiens 0 10690
ENST00000569263 CNOT1-006 processed_transcript Homo_sapiens 0 191
ENST00000569732 CNOT1-015 processed_transcript Homo_sapiens 0 920
ENST00000569882 CNOT1-023 protein_coding Homo_sapiens 0 1188
ENST00000569916 CNOT1-011 retained_intron Homo_sapiens 0 621
ENST00000569924 CNOT1-014 retained_intron Homo_sapiens 0 630

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