C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAP1, GTP-GDP dissociation stimulator 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000098574 Rap1gds1-202 ENSMUSG00000028149 10090 - 3:138925906-139075199 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000098574
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000098574 8.097±2.68 5.351±1.27 5.309±0.68 8.201±2.25 7.884±1.25 6.289±1.68 3.881±0.76 8.610±1.25 3.845±0.93 7.140±1.67 3.016±0.80 6.095±2.71 6.230±1.83 0.628±0.11

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008LO CIL_0008LO_0002 VISTA 3:138442669-139045155

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005739 IEA mitochondrion
GO:0005783 IEA endoplasmic reticulum
GO:0005829 IEA cytosol
GO:0014829 IEA vascular smooth muscle contraction
GO:0031034 IEA myosin filament assembly
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0032471 IEA negative regulation of endoplasmic reticulum calcium ion concentration
GO:0051561 IEA positive regulation of mitochondrial calcium ion concentration
GO:0070062 IEA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000109507 RAP1GDS1-201 protein_coding Danio_rerio 0 568
ENST00000264572 RAP1GDS1-004 protein_coding Homo_sapiens 0 1439
ENST00000339360 RAP1GDS1-006 protein_coding Homo_sapiens 0 2483
ENST00000380158 RAP1GDS1-002 protein_coding Homo_sapiens 0 1770
ENST00000408900 RAP1GDS1-005 protein_coding Homo_sapiens 0 1736
ENST00000408927 RAP1GDS1-001 protein_coding Homo_sapiens 0 2815
ENST00000426884 RP11-421E17.4-001 unprocessed_pseudogene Homo_sapiens 6e-31 135
ENST00000453712 RAP1GDS1-007 protein_coding Homo_sapiens 0 2752
ENST00000503667 RAP1GDS1-009 nonsense_mediated_decay Homo_sapiens 0 300
ENST00000503745 RAP1GDS1-019 processed_transcript Homo_sapiens 0 381
ENST00000505378 RAP1GDS1-003 retained_intron Homo_sapiens 0 976
ENST00000507303 RAP1GDS1-018 retained_intron Homo_sapiens 0 893
ENST00000508213 RAP1GDS1-011 protein_coding Homo_sapiens 0 484
ENST00000508490 RAP1GDS1-010 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000509011 RAP1GDS1-008 protein_coding Homo_sapiens 0 287
ENST00000509501 RAP1GDS1-020 protein_coding Homo_sapiens 0 662
ENST00000510870 RAP1GDS1-012 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000511212 RAP1GDS1-017 protein_coding Homo_sapiens 0 344
ENST00000511379 RAP1GDS1-014 retained_intron Homo_sapiens 0 798
ENST00000512857 RAP1GDS1-015 processed_transcript Homo_sapiens 0 555
ENST00000514122 RAP1GDS1-016 protein_coding Homo_sapiens 0 372
ENST00000515187 RAP1GDS1-013 processed_transcript Homo_sapiens 0 342
ENST00000604134 RP3-365I19.2-001 processed_pseudogene Homo_sapiens 2e-30 134
ENST00000605122 RP11-733D4.2-001 processed_pseudogene Homo_sapiens 2e-30 134
ENST00000618627 CH17-219N22.1-001 processed_pseudogene Homo_sapiens 7e-30 132

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