C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099274 Pdzd8-201 ENSMUSG00000074746 10090 - 19:59296084-59345780 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099274
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099274 4.347±1.76 11.922±1.53 4.177±0.56 6.652±1.61 5.223±3.50 8.379±2.65 2.063±0.16 3.404±0.85 3.348±0.51 8.691±1.79 1.602±0.12 11.423±4.09 6.235±1.22 22.074±8.44

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YJ CIL_0007YJ_0002 VISTA 19:58832961-59434097
CIL_0007ZF CIL_0007ZF_0002 VISTA 19:58834549-59435577
CIL_0008H6 CIL_0008H6_0002 VISTA 19:58967128-59568278
CIL_0007KI CIL_0007KI_0003 UCNEbase 19:59043463-60359839
CIL_0008MK CIL_0008MK_0002 VISTA 19:59123214-59725570
CIL_0008G5 CIL_0008G5_0002 VISTA 19:59165505-59766798
CIL_0007ZG CIL_0007ZG_0002 VISTA 19:59166736-59767688
CIL_0008EZ CIL_0008EZ_0002 VISTA 19:59169921-59771302
CIL_00046Y CIL_00046Y_0003 CGP 19:59260878-59345780

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0007010 IEA cytoskeleton organization
GO:0016020 IEA membrane
GO:0022604 IEA regulation of cell morphogenesis
GO:0035556 IEA intracellular signal transduction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000334464 PDZD8-001 protein_coding Homo_sapiens 0 4224
ENST00000482496 PDZD8-002 processed_transcript Homo_sapiens 0 1120
ENST00000489302 PDZD8-003 processed_transcript Homo_sapiens 0 377
ENST00000489491 PDZD8-004 processed_transcript Homo_sapiens 0 206

Loading