C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PDZ domain containing 8
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000334464 PDZD8-001 ENSG00000165650 9606 - 10:117277274-117375467 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000334464
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000334464 6.517±0.00 2.384±0.00 2.129±0.00 6.354±2.65 2.889±0.25 4.614±0.10 2.208±0.88 5.599±0.75 4.074±0.98 3.640±0.47 1.441±0.71 8.551±4.37 1.958±0.45 9.228±2.76

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YJ CIL_0007YJ_0001 VISTA 10:116794613-117395732
CIL_0007ZF CIL_0007ZF_0001 VISTA 10:116796186-117397238
CIL_0008H6 CIL_0008H6_0001 VISTA 10:116948553-117549645
CIL_0007KI CIL_0007KI_0001 UCNEbase 10:116961332-118177484
CIL_0004GZ CIL_0004GZ_0002 CGP 10:117197489-117279430
CIL_0008MK CIL_0008MK_0001 VISTA 10:117202873-117804737
CIL_00046Y CIL_00046Y_0002 CGP 10:117241093-117375467
CIL_0008G5 CIL_0008G5_0001 VISTA 10:117249689-117851033
CIL_0007ZG CIL_0007ZG_0001 VISTA 10:117250972-117851947
CIL_0008EZ CIL_0008EZ_0001 VISTA 10:117254198-117855349

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0007010 IMP cytoskeleton organization
GO:0016020 IDA membrane
GO:0016032 IEA viral process
GO:0022604 IMP regulation of cell morphogenesis
GO:0035556 IEA intracellular signal transduction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000099274 Pdzd8-201 protein_coding Mus_musculus 0 4224
ENSMUST00000026084 Slc18a2-201 protein_coding Mus_musculus 0 388

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