C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: histocompatibility (minor) HA-1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000099501 Hmha1-001 ENSMUSG00000035697 10090 + 10:80016653-80031472 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000099501
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000099501 3.688±0.43 3.609±0.73 2.254±0.69 0.465±0.01 54.882±22.83 5.255±2.42 1.764±0.73 2.747±1.66 7.130±5.48 18.775±2.65 0.813±0.85 2.278±0.73 0.722±0.23 0.240±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008XG CIL_0008XG_0002 VISTA 10:79539861-80142369
CIL_0000HU CIL_0000HU_0002 CGP 10:79996494-80031472
CIL_00030S CIL_00030S_0002 CGP 10:80016653-80039795

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005622 IEA intracellular
GO:0016020 IEA membrane
GO:0035556 IEA intracellular signal transduction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313093 HMHA1-002 protein_coding Homo_sapiens 0 2394
ENST00000539243 HMHA1-001 protein_coding Homo_sapiens 0 2329
ENST00000543365 HMHA1-004 protein_coding Homo_sapiens 0 2156
ENST00000586033 HMHA1-014 retained_intron Homo_sapiens 0 424
ENST00000586866 HMHA1-007 protein_coding Homo_sapiens 0 2329
ENST00000587602 HMHA1-006 nonsense_mediated_decay Homo_sapiens 0 1240
ENST00000590214 HMHA1-003 protein_coding Homo_sapiens 0 2329

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