C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and calponin homology domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000101164 Limch1-004 ENSMUSG00000037736 10090 + 5:66745835-67056073 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000101164
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000101164 1.149±0.37 3.836±0.75 0.596±0.00 7.779±7.84 0.771±0.39 0.213±0.10 2.799±1.08 0.080±0.04 27.608±6.98 2.598±0.00 1.513±2.17 1.564±1.40 3.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00038J CIL_00038J_0002 CGP 5:66676098-67057159
CIL_00028N CIL_00028N_0003 CGP 5:66745835-67099301

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0003779 IEA actin binding
GO:0005575 ND cellular_component
GO:0008150 ND biological_process
GO:0008270 IEA zinc ion binding
GO:0031032 IEA actomyosin structure organization

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000313860 LIMCH1-001 protein_coding Homo_sapiens 0 3120
ENST00000381753 LIMCH1-018 protein_coding Homo_sapiens 0 2473
ENST00000396595 LIMCH1-017 protein_coding Homo_sapiens 0 3097
ENST00000446625 LIMCH1-010 protein_coding Homo_sapiens 0 992
ENST00000503057 LIMCH1-013 protein_coding Homo_sapiens 0 1936
ENST00000508466 LIMCH1-019 protein_coding Homo_sapiens 0 2488
ENST00000508501 LIMCH1-002 protein_coding Homo_sapiens 0 3723
ENST00000509277 LIMCH1-015 protein_coding Homo_sapiens 0 1879
ENST00000509454 LIMCH1-016 protein_coding Homo_sapiens 0 569
ENST00000509638 LIMCH1-004 protein_coding Homo_sapiens 0 998
ENST00000511424 LIMCH1-026 protein_coding Homo_sapiens 0 592
ENST00000511496 LIMCH1-012 protein_coding Homo_sapiens 0 3014
ENST00000512228 LIMCH1-023 processed_transcript Homo_sapiens 0 466
ENST00000512632 LIMCH1-006 protein_coding Homo_sapiens 0 2425
ENST00000512820 LIMCH1-007 protein_coding Homo_sapiens 0 1315
ENST00000512946 LIMCH1-005 protein_coding Homo_sapiens 0 3714
ENST00000513024 LIMCH1-003 protein_coding Homo_sapiens 0 1315
ENST00000514096 LIMCH1-014 protein_coding Homo_sapiens 0 2375
ENST00000514190 LIMCH1-024 processed_transcript Homo_sapiens 0 425
ENST00000515847 LIMCH1-022 processed_transcript Homo_sapiens 0 204

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