C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily V, member 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102526 Trpv1-001 ENSMUSG00000005952 10090 + 11:73234292-73261239 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102526
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102526 0.944±0.54 0.352±0.08 0.088±0.00 0.052±0.03 0.712±0.27 0.150±0.05 0.056±0.01 0.028±0.00 0.008±0.00 0.109±0.04 0.080±0.01 0.151±0.10 0.404±0.00 0.256±0.15

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00031U CIL_00031U_0002 CGP 11:73199460-73261242

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001659 IMP temperature homeostasis
GO:0001660 IMP fever generation
GO:0001774 IEA microglial cell activation
GO:0002024 IMP diet induced thermogenesis
GO:0002790 IMP peptide secretion
GO:0004888 ISS transmembrane signaling receptor activity
GO:0005216 IDA ion channel activity
GO:0005231 ISS excitatory extracellular ligand-gated ion channel activity
GO:0005261 ISA cation channel activity
GO:0005262 IMP calcium channel activity
GO:0005516 IEA calmodulin binding
GO:0005524 ISS ATP binding
GO:0005829 IEA cytosol
GO:0005886 IEA plasma membrane
GO:0006629 IMP lipid metabolic process
GO:0006812 ISA cation transport
GO:0006816 IDA calcium ion transport
GO:0006954 IEA inflammatory response
GO:0007165 ISS signal transduction
GO:0007204 IEA positive regulation of cytosolic calcium ion concentration
GO:0008324 IEA cation transmembrane transporter activity
GO:0009268 IMP response to pH
GO:0009408 IMP response to heat
GO:0009897 IEA external side of plasma membrane
GO:0010243 IMP response to organonitrogen compound
GO:0014047 IEA glutamate secretion
GO:0014832 IMP urinary bladder smooth muscle contraction
GO:0015276 IEA ligand-gated ion channel activity
GO:0015278 ISS calcium-release channel activity
GO:0016020 ISA membrane
GO:0016021 IEA integral component of membrane
GO:0017081 IEA chloride channel regulator activity
GO:0019233 IMP sensory perception of pain
GO:0030054 IEA cell junction
GO:0030425 IEA dendrite
GO:0031226 ISS intrinsic component of plasma membrane
GO:0034220 IDA ion transmembrane transport
GO:0042802 IEA identical protein binding
GO:0043005 IDA neuron projection
GO:0043025 IEA neuronal cell body
GO:0043065 IEA positive regulation of apoptotic process
GO:0043434 IEA response to peptide hormone
GO:0045202 IEA synapse
GO:0045211 IEA postsynaptic membrane
GO:0045429 IEA positive regulation of nitric oxide biosynthetic process
GO:0048265 IDA response to pain
GO:0048266 IMP behavioral response to pain
GO:0050954 IMP sensory perception of mechanical stimulus
GO:0050968 IDA detection of chemical stimulus involved in sensory perception of pain
GO:0060083 IMP smooth muscle contraction involved in micturition
GO:0060454 IEA positive regulation of gastric acid secretion
GO:0070588 IMP:IEA calcium ion transmembrane transport
GO:0071312 ISS cellular response to alkaloid
GO:0071318 ISS cellular response to ATP
GO:0071345 IEA cellular response to cytokine stimulus
GO:0071356 IEA cellular response to tumor necrosis factor
GO:0071363 IEA cellular response to growth factor stimulus
GO:0071502 IEA cellular response to temperature stimulus
GO:0090212 IEA negative regulation of establishment of blood-brain barrier
GO:0098655 ISA cation transmembrane transport
GO:1990090 IEA cellular response to nerve growth factor stimulus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000261740 TRPV4-001 protein_coding Homo_sapiens 0 198
ENST00000310522 TRPV1-006 protein_coding Homo_sapiens 0 1502
ENST00000399756 TRPV1-003 protein_coding Homo_sapiens 0 2704
ENST00000399759 TRPV1-002 protein_coding Homo_sapiens 0 2704
ENST00000418703 TRPV4-006 protein_coding Homo_sapiens 0 198
ENST00000425167 TRPV1-005 protein_coding Homo_sapiens 0 1735
ENST00000536838 TRPV4-005 protein_coding Homo_sapiens 0 198
ENST00000537083 TRPV4-003 protein_coding Homo_sapiens 0 198
ENST00000538125 TRPV4-007 nonsense_mediated_decay Homo_sapiens 0 198
ENST00000541794 TRPV4-004 protein_coding Homo_sapiens 0 198
ENST00000544971 TRPV4-002 protein_coding Homo_sapiens 0 198
ENST00000570742 TRPV1-008 retained_intron Homo_sapiens 0 381
ENST00000571088 TRPV1-001 protein_coding Homo_sapiens 0 2728
ENST00000572705 TRPV1-002 protein_coding Homo_sapiens 0 2704
ENST00000572919 TRPV1-001 nonsense_mediated_decay Homo_sapiens 0 1399
ENST00000574085 TRPV1-007 retained_intron Homo_sapiens 0 2372
ENST00000576351 TRPV1-004 protein_coding Homo_sapiens 0 1506

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