C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TM2 domain containing 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102793 Tm2d1-001 ENSMUSG00000028563 10090 - 4:98355370-98383306 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000102793
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000102793 13.566±1.49 50.511±38.72 20.318±3.91 17.488±11.48 8.560±2.30 7.903±6.71 14.519±0.19 22.379±5.67 11.860±3.01 17.700±6.72 18.203±1.19 16.810±13.57 12.998±9.82 5.661±2.75

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001NA CIL_0001NA_0002 CGP 4:97772734-98383306
CIL_0008LM CIL_0008LM_0002 VISTA 4:97807609-98410094
CIL_00085K CIL_00085K_0002 VISTA 4:97921540-98524627
CIL_00094S CIL_00094S_0002 VISTA 4:97942382-98545050
CIL_0002G1 CIL_0002G1_0002 CGP 4:98355370-98719603

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001540 IDA beta-amyloid binding
GO:0004930 IDA G-protein coupled receptor activity
GO:0005887 IDA integral component of plasma membrane
GO:0007186 IDA G-protein coupled receptor signaling pathway
GO:0097190 IDA apoptotic signaling pathway

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000294613 TM2D1-201 protein_coding Homo_sapiens 0 728
ENST00000371178 TM2D1-008 retained_intron Homo_sapiens 0 514
ENST00000371180 TM2D1-001 protein_coding Homo_sapiens 0 725
ENST00000468586 TM2D1-005 nonsense_mediated_decay Homo_sapiens 0 446
ENST00000472357 TM2D1-010 retained_intron Homo_sapiens 0 217
ENST00000472989 TM2D1-011 processed_transcript Homo_sapiens 0 479
ENST00000488206 TM2D1-003 nonsense_mediated_decay Homo_sapiens 0 643
ENST00000488410 TM2D1-006 processed_transcript Homo_sapiens 3e-35 152
ENST00000494926 TM2D1-004 nonsense_mediated_decay Homo_sapiens 0 355
ENST00000496465 TM2D1-002 nonsense_mediated_decay Homo_sapiens 0 444
ENST00000606498 TM2D1-012 protein_coding Homo_sapiens 0 730

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