C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000102834 Ptprd-004 ENSMUSG00000028399 10090 - 4:75941239-76133882 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainLiverMusclePlacentaTestisENSMUST00000102834
Transcript ID Bladder Brain Liver Muscle Placenta Testis
ENSMUST00000102834 0.556±0.20 18.528±10.77 0.901±0.78 0.120±0.04 0.098±0.07 0.238±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003OT CIL_0003OT_0002 CGP 4:75277354-78211961
CIL_0007VK CIL_0007VK_0002 VISTA 4:75400793-76001396
CIL_0007LL CIL_0007LL_0002 UCNEbase 4:75700943-76138737
CIL_0005UW CIL_0005UW_0003 CGP 4:75941238-80851719

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000082630 CABZ01084323.1-201 protein_coding Danio_rerio 0 531
ENST00000355233 PTPRD-201 protein_coding Homo_sapiens 0 5541
ENST00000356435 PTPRD-202 protein_coding Homo_sapiens 0 4037
ENST00000381196 PTPRD-002 protein_coding Homo_sapiens 0 4037
ENST00000397606 PTPRD-006 protein_coding Homo_sapiens 0 2867
ENST00000397611 PTPRD-203 protein_coding Homo_sapiens 0 5555
ENST00000397617 PTPRD-204 protein_coding Homo_sapiens 0 2867
ENST00000477552 PTPRD-007 retained_intron Homo_sapiens 0 326
ENST00000486161 PTPRD-003 protein_coding Homo_sapiens 0 5555
ENST00000537002 PTPRD-205 protein_coding Homo_sapiens 0 5596
ENST00000540109 PTPRD-206 protein_coding Homo_sapiens 0 4037

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