C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000537002 PTPRD-205 ENSG00000153707 9606 - 9:8314247-8733949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastPlacentaTestisENST00000537002
Transcript ID Adipose Brain Breast Placenta Testis
ENST00000537002 0.084±0.00 5.266±0.33 0.184±0.02 0.385±0.00 0.370±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VK CIL_0007VK_0001 VISTA 9:7795553-8396166
CIL_0003OT CIL_0003OT_0001 CGP 9:7796490-10612723
CIL_0007LL CIL_0007LL_0001 UCNEbase 9:8095704-8526809
CIL_0005UW CIL_0005UW_0002 CGP 9:8314246-12710290

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0006470 IEA protein dephosphorylation
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000173376 Ptprd-018 protein_coding Mus_musculus 0 6482
ENSMUST00000174531 Ptprd-021 protein_coding Mus_musculus 0 6277
ENSMUST00000174023 Ptprd-016 protein_coding Mus_musculus 0 6165
ENSMUST00000098005 Ptprd-015 protein_coding Mus_musculus 0 6131
ENSMUST00000174831 Ptprd-013 protein_coding Mus_musculus 0 6130
ENSMUST00000102834 Ptprd-004 protein_coding Mus_musculus 0 5596
ENSMUST00000107289 Ptprd-001 protein_coding Mus_musculus 0 4037
ENSMUST00000174180 Ptprd-014 protein_coding Mus_musculus 0 3808
ENSMUST00000050757 Ptprd-009 protein_coding Mus_musculus 0 3742
ENSMUST00000107287 Ptprd-002 processed_transcript Mus_musculus 0 784
ENSMUST00000084467 Ptprd-010 processed_transcript Mus_musculus 0 743
ENSMUST00000173560 Ptprd-011 retained_intron Mus_musculus 0 484
ENSMUST00000173662 Ptprd-017 protein_coding Mus_musculus 0 411
ENSMUST00000174832 Ptprd-012 protein_coding Mus_musculus 0 274

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