C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397617 PTPRD-204 ENSG00000153707 9606 - 9:8314247-8733946 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainHeartLiverLungOvaryPlacentaENST00000397617
Transcript ID Adrenal Brain Heart Liver Lung Ovary Placenta
ENST00000397617 0.231±0.00 3.917±0.00 0.412±0.00 0.195±0.00 0.358±0.00 0.731±0.00 0.754±0.45

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VK CIL_0007VK_0001 VISTA 9:7795553-8396166
CIL_0003OT CIL_0003OT_0001 CGP 9:7796490-10612723
CIL_0007LL CIL_0007LL_0001 UCNEbase 9:8095704-8526809
CIL_0005UW CIL_0005UW_0002 CGP 9:8314246-12710290

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005515 IEA protein binding
GO:0006470 IEA protein dephosphorylation
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0035335 IEA peptidyl-tyrosine dephosphorylation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050757 Ptprd-009 protein_coding Mus_musculus 0 6366
ENSMUST00000174531 Ptprd-021 protein_coding Mus_musculus 0 3683
ENSMUST00000173376 Ptprd-018 protein_coding Mus_musculus 0 3668
ENSMUST00000174023 Ptprd-016 protein_coding Mus_musculus 0 3596
ENSMUST00000098005 Ptprd-015 protein_coding Mus_musculus 0 3546
ENSMUST00000174831 Ptprd-013 protein_coding Mus_musculus 0 3546
ENSMUST00000102834 Ptprd-004 protein_coding Mus_musculus 0 2867
ENSMUST00000107289 Ptprd-001 protein_coding Mus_musculus 0 2748
ENSMUST00000174180 Ptprd-014 protein_coding Mus_musculus 0 2519
ENSMUST00000107287 Ptprd-002 processed_transcript Mus_musculus 0 785
ENSMUST00000084467 Ptprd-010 processed_transcript Mus_musculus 0 743
ENSMUST00000173560 Ptprd-011 retained_intron Mus_musculus 0 479
ENSMUST00000173662 Ptprd-017 protein_coding Mus_musculus 0 403
ENSMUST00000174832 Ptprd-012 protein_coding Mus_musculus 0 274

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