C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Region Summary
CIL_0003OT_0001 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSG00000137038-ENSG00000153707 CGP 9606 9:7796490-10612723
GeneTranscriptPositionBiotype
ENSG00000137038 (TMEM261)
transmembrane protein 261 		ENST00000358227 (TMEM261-003) 7796490-7800067 protein_coding
ENST00000469050 (TMEM261-002) 7798344-7888380 processed_transcript
ENST00000484082 (TMEM261-001) 7798199-7800148 processed_transcript
ENSG00000212695 (RP11-134K1.2)
 ENST00000391389 (RP11-134K1.2-001) 8713311-8713841 processed_pseudogene
ENSG00000212829 (RPS26P3)
ribosomal protein S26 pseudogene 3 		ENST00000470205 (RPS26P3-001) 9090898-9091245 processed_pseudogene
ENSG00000225706 (PTPRD-AS1)
PTPRD antisense RNA 1 		ENST00000430766 (PTPRD-AS1-001) 8858134-8861724 lincRNA
ENST00000447950 (PTPRD-AS1-002) 8858130-8862255 lincRNA
ENSG00000230920 (RP11-527D15.1)
 ENST00000449531 (RP11-527D15.1-001) 9799423-9803784 lincRNA
ENSG00000231902 (RP11-29B9.2)
 ENST00000435444 (RP11-29B9.2-001) 7960413-7961080 lincRNA
ENSG00000234021 (RP11-75C9.2)
 ENST00000419824 (RP11-75C9.2-001) 8936079-8963077 lincRNA
ENSG00000234360 (RP11-87N24.1)
 ENST00000437701 (RP11-87N24.1-001) 10532145-10532411 processed_pseudogene
ENSG00000235389 (RP11-134K1.3)
 ENST00000418571 (RP11-134K1.3-001) 8700595-8701552 sense_intronic
ENSG00000265735 (RN7SL5P)
RNA, 7SL, cytoplasmic 5, pseudogene 		ENST00000581458 (RN7SL5P-201) 9442060-9442380 misc_RNA
CIL_0003OT_0002 (Click to Hide/Show)
Source ID Type Tax ID Position
ENSMUSG00000028398-ENSMUSG00000028399 CGP 10090 4:75277354-78211961
GeneTranscriptPositionBiotype
ENSMUSG00000028398 (Tmem261)
transmembrane protein 261 		ENSMUST00000030103 (Tmem261-001) 75277354-75278305 protein_coding
ENSMUSG00000028399 (Ptprd)
protein tyrosine phosphatase, receptor type, D 		ENSMUST00000050757 (Ptprd-009) 75944958-76344243 protein_coding
ENSMUST00000084467 (Ptprd-010) 76140358-76325288 processed_transcript
ENSMUST00000098005 (Ptprd-015) 75944958-76325264 protein_coding
ENSMUST00000102834 (Ptprd-004) 75941239-76133882 protein_coding
ENSMUST00000107287 (Ptprd-002) 76139382-78211895 processed_transcript
ENSMUST00000107289 (Ptprd-001) 75941238-76449980 protein_coding
ENSMUST00000129550 (Ptprd-007) 77917524-78211852 processed_transcript
ENSMUST00000134604 (Ptprd-008) 77925213-78211843 retained_intron
ENSMUST00000138955 (Ptprd-006) 76593551-78211739 processed_transcript
ENSMUST00000140422 (Ptprd-003) 77351290-78211961 processed_transcript
ENSMUST00000156656 (Ptprd-005) 76591325-78211867 processed_transcript
ENSMUST00000172811 (Ptprd-019) 76099412-76107395 nonsense_mediated_decay
ENSMUST00000173376 (Ptprd-018) 75944806-76594299 protein_coding
ENSMUST00000173560 (Ptprd-011) 76082247-76101444 retained_intron
ENSMUST00000173592 (Ptprd-020) 77193100-78211739 retained_intron
ENSMUST00000173662 (Ptprd-017) 76084371-76086516 protein_coding
ENSMUST00000174023 (Ptprd-016) 75944958-76325264 protein_coding
ENSMUST00000174180 (Ptprd-014) 75944958-76325264 protein_coding
ENSMUST00000174531 (Ptprd-021) 75944958-76325264 protein_coding
ENSMUST00000174831 (Ptprd-013) 75944958-76325243 protein_coding
ENSMUST00000174832 (Ptprd-012) 76133158-76134143 protein_coding
ENSMUSG00000080780 (Gm11252)
predicted gene 11252 		ENSMUST00000120572 (Gm11252-001) 76393154-76394092 processed_pseudogene
ENSMUSG00000081656 (Gm11246)
predicted gene 11246 		ENSMUST00000120880 (Gm11246-001) 76927311-76927655 processed_pseudogene
ENSMUSG00000081844 (Gm11241)
predicted gene 11241 		ENSMUST00000117371 (Gm11241-001) 75902260-75903155 processed_pseudogene
ENSMUSG00000081890 (Gm11243)
predicted gene 11243 		ENSMUST00000122335 (Gm11243-001) 76793729-76794122 processed_pseudogene
ENSMUSG00000081936 (Gm11244)
predicted gene 11244 		ENSMUST00000121243 (Gm11244-001) 76811555-76811791 processed_pseudogene
ENSMUSG00000083050 (Gm11242)
predicted gene 11242 		ENSMUST00000120103 (Gm11242-001) 76692143-76694599 processed_pseudogene
ENSMUSG00000084090 (Gm11245)
predicted gene 11245 		ENSMUST00000119419 (Gm11245-001) 76837779-76838815 processed_pseudogene
ENSMUSG00000084253 (Gm11256)
predicted gene 11256 		ENSMUST00000118109 (Gm11256-001) 75854518-75855346 processed_pseudogene

Expression Patterns

Heat Map
Heat Map (Expressed Only)
Numeric Values
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003OT_0001ENSG00000137038ENST00000358227ENST00000469050ENST00000484082ENSG00000212695ENST00000391389ENSG00000212829ENST00000470205ENSG00000225706ENST00000430766ENST00000447950ENSG00000230920ENST00000449531ENSG00000231902ENST00000435444ENSG00000234021ENST00000419824ENSG00000234360ENST00000437701ENSG00000235389ENST00000418571ENSG00000265735ENST00000581458CIL_0003OT_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
Region; Gene Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisCIL_0003OT_0001ENSG00000137038ENST00000358227ENST00000469050ENST00000484082ENSG00000212695ENST00000391389ENSG00000212829ENST00000470205ENSG00000225706ENST00000430766ENST00000447950ENSG00000230920ENST00000449531ENSG00000231902ENST00000435444ENSG00000234021ENST00000419824ENSG00000234360ENST00000437701ENSG00000235389ENST00000418571ENSG00000265735ENST00000581458CIL_0003OT_0002ENSMUSG00000028398ENSMUST00000030103ENSMUSG00000028399ENSMUST00000050757ENSMUST00000102834ENSMUST00000107287ENSMUST00000107289ENSMUST00000173376ENSMUST00000174180ENSMUST00000174531ENSMUST00000174831ENSMUSG00000080780ENSMUST00000120572ENSMUSG00000081656ENSMUST00000120880ENSMUSG00000081844ENSMUST00000117371ENSMUSG00000081890ENSMUST00000122335ENSMUSG00000081936ENSMUST00000121243ENSMUSG00000083050ENSMUST00000120103ENSMUSG00000084090ENSMUST00000119419ENSMUSG00000084253ENSMUST00000118109
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSG00000137038 ENST00000358227 2.567±0.00 3.604±0.00 1.487±0.00 3.937±0.01 2.650±1.59 2.502±1.52 3.251±1.26 3.439±2.36 0.776±0.24 2.081±0.32 1.846±0.71 3.048±2.13 3.646±1.37 3.279±1.71
ENST00000469050 13.400±0.00 14.626±0.00 N/A 13.414±6.31 18.823±0.00 14.168±9.59 11.300±0.00 16.133±12.47 7.271±5.88 21.376±0.00 17.105±0.00 36.382±5.67 33.135±12.91 26.638±3.88
ENST00000484082 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.924±0.00 1.042±0.00 N/A N/A
ENSG00000212695 ENST00000391389 0.596±0.00 0.463±0.00 N/A 0.272±0.00 0.379±0.00 1.035±0.00 N/A 0.127±0.00 0.538±0.00 0.176±0.00 0.663±0.00 0.462±0.26 N/A 0.326±0.00
ENSG00000212829 ENST00000470205 0.058±0.00 0.062±0.00 N/A 0.067±0.00 N/A 0.240±0.00 N/A N/A 0.236±0.06 0.303±0.00 0.163±0.00 0.184±0.05 0.338±0.10 N/A
ENSG00000225706 ENST00000430766 N/A N/A N/A 0.170±0.00 N/A 0.033±0.00 N/A 0.102±0.00 N/A N/A N/A N/A N/A 0.100±0.05
ENST00000447950 0.063±0.00 0.406±0.00 0.034±0.00 0.866±0.40 0.139±0.00 0.525±0.20 0.180±0.00 0.091±0.00 0.044±0.00 0.310±0.19 0.189±0.00 1.209±0.75 0.294±0.10 0.060±0.01
ENSG00000230920 ENST00000449531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.345±0.17
ENSG00000231902 ENST00000435444 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 1.464±0.00
ENSG00000234021 ENST00000419824 N/A N/A N/A 0.062±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.034±0.00
ENSG00000234360 ENST00000437701 N/A N/A N/A 1.392±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSG00000235389 ENST00000418571 N/A 0.065±0.00 N/A 0.409±0.36 N/A N/A 0.020±0.00 0.164±0.00 0.018±0.00 0.104±0.00 N/A 0.098±0.05 N/A 0.082±0.00
ENSG00000265735 ENST00000581458 0.455±0.00 0.625±0.00 7.698±0.00 34.380±33.74 31.145±30.48 4.275±3.90 2.006±1.93 18.954±18.45 22.461±22.39 5.689±5.15 7.836±7.76 7.882±7.62 0.189±0.00 0.447±0.00
Gene Transcript Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUSG00000028398 ENSMUST00000030103 30.881±4.49 52.935±5.38 22.571±4.21 19.334±6.15 45.473±14.55 27.176±3.12 23.919±3.57 31.646±3.83 26.233±6.46 21.773±3.13 28.287±5.39 28.597±7.43 21.948±6.21 16.092±2.37
ENSMUSG00000028399 ENSMUST00000050757 N/A N/A N/A N/A 0.894±0.00 N/A N/A N/A 2.277±0.00 N/A N/A N/A N/A 0.437±0.00
ENSMUST00000084467 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000098005 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000102834 N/A N/A 0.556±0.20 18.528±10.77 N/A N/A N/A N/A 0.901±0.78 N/A 0.120±0.04 N/A 0.098±0.07 0.238±0.00
ENSMUST00000107287 N/A 3.064±0.56 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000107289 2.445±1.06 1.615±0.58 0.618±0.07 8.749±4.16 2.291±0.21 N/A 0.480±0.27 5.522±1.33 1.525±1.22 4.246±0.53 0.176±0.06 5.591±1.71 N/A 0.474±0.07
ENSMUST00000129550 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000134604 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000138955 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000140422 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000156656 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000172811 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173376 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.471±0.00
ENSMUST00000173560 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173592 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000173662 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174023 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174180 1.754±0.39 2.087±0.82 N/A N/A 1.438±0.66 2.085±0.30 0.517±0.08 4.980±1.77 1.323±0.92 2.067±0.19 0.234±0.00 8.348±5.18 0.132±0.00 1.117±0.28
ENSMUST00000174531 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 7.271±0.00 N/A N/A
ENSMUST00000174831 N/A N/A N/A 15.448±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUST00000174832 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000080780 ENSMUST00000120572 0.089±0.02 N/A 0.030±0.02 0.137±0.00 N/A 0.132±0.00 0.040±0.00 0.208±0.09 0.054±0.06 0.080±0.02 N/A 0.279±0.17 0.028±0.02 0.103±0.00
ENSMUSG00000081656 ENSMUST00000120880 N/A N/A 0.079±0.00 0.508±0.06 N/A N/A N/A N/A 0.034±0.00 N/A N/A 0.299±0.00 0.026±0.00 N/A
ENSMUSG00000081844 ENSMUST00000117371 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A 0.032±0.00 N/A 0.051±0.01
ENSMUSG00000081890 ENSMUST00000122335 N/A N/A N/A 0.035±0.00 N/A N/A N/A N/A 0.086±0.00 0.164±0.00 N/A N/A N/A 0.315±0.19
ENSMUSG00000081936 ENSMUST00000121243 N/A N/A N/A 0.387±0.23 N/A N/A N/A N/A N/A 0.794±0.00 N/A N/A N/A N/A
ENSMUSG00000083050 ENSMUST00000120103 N/A N/A N/A 0.034±0.00 N/A N/A N/A N/A N/A N/A N/A N/A N/A N/A
ENSMUSG00000084090 ENSMUST00000119419 N/A N/A N/A 0.130±0.03 N/A N/A N/A 0.297±0.00 N/A N/A N/A N/A N/A 0.051±0.00
ENSMUSG00000084253 ENSMUST00000118109 N/A N/A N/A N/A N/A N/A 0.090±0.00 N/A N/A N/A N/A N/A N/A 0.154±0.00

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