C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein tyrosine phosphatase, receptor type, D
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000397606 PTPRD-006 ENSG00000153707 9606 - 9:8317405-8733894 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainHeartKidneyLiverMuscleOvaryTestisENST00000397606
Transcript ID Bladder Brain Heart Kidney Liver Muscle Ovary Testis
ENST00000397606 1.577±0.00 5.416±1.05 0.277±0.14 0.741±0.00 1.219±0.00 0.055±0.00 0.413±0.00 0.585±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007VK CIL_0007VK_0001 VISTA 9:7795553-8396166
CIL_0003OT CIL_0003OT_0001 CGP 9:7796490-10612723
CIL_0007LL CIL_0007LL_0001 UCNEbase 9:8095704-8526809
CIL_0005UW CIL_0005UW_0002 CGP 9:8314246-12710290

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004725 IEA protein tyrosine phosphatase activity
GO:0005001 TAS transmembrane receptor protein tyrosine phosphatase activity
GO:0005102 ISS receptor binding
GO:0005515 IPI:IEA protein binding
GO:0005887 TAS integral component of plasma membrane
GO:0006470 TAS:IEA protein dephosphorylation
GO:0006796 NAS phosphate-containing compound metabolic process
GO:0007157 ISS heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules
GO:0007185 TAS transmembrane receptor protein tyrosine phosphatase signaling pathway
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0030182 ISS neuron differentiation
GO:0035335 IEA peptidyl-tyrosine dephosphorylation
GO:0050775 ISS positive regulation of dendrite morphogenesis
GO:0050839 ISS cell adhesion molecule binding
GO:0070062 IDA extracellular vesicular exosome
GO:0097105 ISS presynaptic membrane assembly

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000050757 Ptprd-009 protein_coding Mus_musculus 0 6342
ENSMUST00000174531 Ptprd-021 protein_coding Mus_musculus 0 3699
ENSMUST00000173376 Ptprd-018 protein_coding Mus_musculus 0 3633
ENSMUST00000174023 Ptprd-016 protein_coding Mus_musculus 0 3585
ENSMUST00000098005 Ptprd-015 protein_coding Mus_musculus 0 3552
ENSMUST00000174831 Ptprd-013 protein_coding Mus_musculus 0 3552
ENSMUST00000102834 Ptprd-004 protein_coding Mus_musculus 0 2867
ENSMUST00000107289 Ptprd-001 protein_coding Mus_musculus 0 2748
ENSMUST00000174180 Ptprd-014 protein_coding Mus_musculus 0 2519
ENSMUST00000084467 Ptprd-010 processed_transcript Mus_musculus 0 743
ENSMUST00000107287 Ptprd-002 processed_transcript Mus_musculus 0 743
ENSMUST00000173560 Ptprd-011 retained_intron Mus_musculus 0 479
ENSMUST00000173662 Ptprd-017 protein_coding Mus_musculus 0 403
ENSMUST00000174832 Ptprd-012 protein_coding Mus_musculus 0 274

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