C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transcription factor 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105342 Tcf3-006 ENSMUSG00000020167 10090 - 10:80409547-80433643 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaENSMUST00000105342
Transcript ID Adrenal Bladder Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000105342 6.176±0.65 2.735±0.00 14.078±3.17 9.505±0.00 5.299±0.31 2.410±0.46 5.186±4.18 5.166±0.00 1.075±0.43 12.755±0.60 2.588±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004BR CIL_0004BR_0002 CGP 10:80402997-80433647
CIL_000188 CIL_000188_0002 CGP 10:80409514-80517276

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IEA negative regulation of transcription from RNA polymerase II promoter
GO:0000788 IDA nuclear nucleosome
GO:0000790 IEA nuclear chromatin
GO:0000978 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding
GO:0001078 IEA RNA polymerase II core promoter proximal region sequence-specific DNA binding transcription factor activity involved in negative regulation of transcription
GO:0001779 IGI natural killer cell differentiation
GO:0003677 IDA DNA binding
GO:0003682 IDA chromatin binding
GO:0003700 TAS sequence-specific DNA binding transcription factor activity
GO:0003713 IEA transcription coactivator activity
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005667 IDA transcription factor complex
GO:0005737 IEA cytoplasm
GO:0006351 IEA transcription, DNA-templated
GO:0006355 IDA regulation of transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008134 IEA transcription factor binding
GO:0010628 IMP positive regulation of gene expression
GO:0030098 IMP lymphocyte differentiation
GO:0030890 IEA positive regulation of B cell proliferation
GO:0031435 IEA mitogen-activated protein kinase kinase kinase binding
GO:0032496 IMP response to lipopolysaccharide
GO:0033077 IMP T cell differentiation in thymus
GO:0033152 IMP immunoglobulin V(D)J recombination
GO:0042493 IMP response to drug
GO:0042803 IDA protein homodimerization activity
GO:0043234 IEA protein complex
GO:0043425 IEA bHLH transcription factor binding
GO:0043565 IGI sequence-specific DNA binding
GO:0043966 IMP histone H3 acetylation
GO:0043967 IMP histone H4 acetylation
GO:0044212 IEA transcription regulatory region DNA binding
GO:0045787 IEA positive regulation of cell cycle
GO:0045893 IGI positive regulation of transcription, DNA-templated
GO:0045944 IGI positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IPI protein heterodimerization activity
GO:0048468 IGI cell development
GO:0048541 IGI Peyer's patch development
GO:0050821 IDA protein stabilization
GO:0051091 IEA positive regulation of sequence-specific DNA binding transcription factor activity
GO:0070491 IEA repressing transcription factor binding
GO:0070644 IEA vitamin D response element binding
GO:0070888 IEA E-box binding
GO:2000045 IEA regulation of G1/S transition of mitotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000262965 TCF3-201 protein_coding Homo_sapiens 0 1613
ENST00000344749 TCF3-202 protein_coding Homo_sapiens 0 1112
ENST00000395423 TCF3-003 protein_coding Homo_sapiens 0 898
ENST00000453954 TCF3-008 protein_coding Homo_sapiens 0 1105
ENST00000585855 TCF3-015 nonsense_mediated_decay Homo_sapiens 0 427
ENST00000586164 TCF3-011 nonsense_mediated_decay Homo_sapiens 0 348
ENST00000586318 TCF3-007 protein_coding Homo_sapiens 0 267
ENST00000587235 TCF3-017 protein_coding Homo_sapiens 0 544
ENST00000587425 TCF3-013 protein_coding Homo_sapiens 0 523
ENST00000588136 TCF3-002 protein_coding Homo_sapiens 0 1376
ENST00000590436 TCF3-009 protein_coding Homo_sapiens 0 193
ENST00000590605 TCF3-018 retained_intron Homo_sapiens 0 407
ENST00000592395 TCF3-012 nonsense_mediated_decay Homo_sapiens 0 274
ENST00000592628 TCF3-006 protein_coding Homo_sapiens 0 551
ENST00000593064 TCF3-014 protein_coding Homo_sapiens 0 580
ENST00000610756 TCF3-010 retained_intron Homo_sapiens 0 1035
ENST00000611869 TCF3-001 protein_coding Homo_sapiens 0 1613

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