C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: PR domain containing 16
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000105636 Prdm16-004 ENSMUSG00000039410 10090 - 4:154316125-154636866 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaENSMUST00000105636
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta
ENSMUST00000105636 0.224±0.00 0.266±0.03 0.119±0.00 0.256±0.12 0.235±0.00 0.461±0.00 0.514±0.00 0.023±0.02 2.044±0.53 0.098±0.00 0.204±0.07 0.043±0.01

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00099V CIL_00099V_0002 VISTA 4:154093365-154697126
CIL_0007TB CIL_0007TB_0002 VISTA 4:154156294-154757167

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0022008 IDA neurogenesis
GO:0030512 IMP negative regulation of transforming growth factor beta receptor signaling pathway
GO:0035019 IDA somatic stem cell maintenance
GO:0043586 IMP tongue development
GO:0046332 IPI SMAD binding
GO:0046872 IEA metal ion binding
GO:0060021 IMP palate development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000086053 prdm16-201 protein_coding Danio_rerio 0 529
ENSDART00000122737 prdm16-001 protein_coding Danio_rerio 0 529
ENST00000270722 PRDM16-001 protein_coding Homo_sapiens 0 3903
ENST00000378389 PRDM16-005 processed_transcript Homo_sapiens 0 730
ENST00000378391 PRDM16-003 protein_coding Homo_sapiens 0 3923
ENST00000463591 PRDM16-004 protein_coding Homo_sapiens 9.94922e-44 180
ENST00000509860 PRDM16-002 protein_coding Homo_sapiens 0 3175
ENST00000511072 PRDM16-007 protein_coding Homo_sapiens 0 4148
ENST00000512462 PRDM16-009 processed_transcript Homo_sapiens 0 3352
ENST00000514189 PRDM16-008 protein_coding Homo_sapiens 0 4095
ENST00000606170 PRDM16-011 retained_intron Homo_sapiens 0 261
ENST00000607632 PRDM16-010 retained_intron Homo_sapiens 0 597

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