C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: TIA1 cytotoxic granule-associated RNA binding protein-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000369093 TIAL1-005 ENSG00000151923 9606 - 10:119571802-119596495 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000369093
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000369093 5.197±0.00 5.312±0.00 5.962±0.00 4.154±1.70 5.525±0.00 2.469±2.03 5.071±0.00 2.428±0.00 4.201±0.00 4.045±0.00 4.871±2.21 3.079±1.12 5.244±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003IZ CIL_0003IZ_0001 CGP 10:119499828-119597029
CIL_0004GP CIL_0004GP_0002 CGP 10:119571802-119677819

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 TAS RNA binding
GO:0005515 IEA protein binding
GO:0005634 ISS nucleus
GO:0005737 ISS cytoplasm
GO:0005764 TAS lysosome
GO:0006357 TAS regulation of transcription from RNA polymerase II promoter
GO:0006915 IEA apoptotic process
GO:0006952 TAS defense response
GO:0007281 IEA germ cell development
GO:0008284 IEA positive regulation of cell proliferation
GO:0010494 ISS cytoplasmic stress granule
GO:0017091 IEA AU-rich element binding
GO:0017145 IEA stem cell division
GO:0044822 IDA poly(A) RNA binding
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000106226 Tial1-001 protein_coding Mus_musculus 0 3157
ENSMUST00000133444 Tial1-002 processed_transcript Mus_musculus 0 2630
ENSMUST00000165023 Tial1-201 protein_coding Mus_musculus 0 2401
ENSMUST00000033135 Tial1-004 protein_coding Mus_musculus 0 1890
ENSMUST00000141126 Tial1-005 processed_transcript Mus_musculus 0 1652
ENSMUST00000123666 Tial1-003 nonsense_mediated_decay Mus_musculus 0 1445
ENSMUST00000106228 Tial1-006 protein_coding Mus_musculus 0 1266
ENSMUST00000141079 Tial1-007 retained_intron Mus_musculus 0 1160
ENSMUST00000133089 Tial1-010 processed_transcript Mus_musculus 0 907
ENSDART00000135321 tial1-002 protein_coding Danio_rerio 0 737
ENSMUST00000136782 Tial1-009 retained_intron Mus_musculus 0 542
ENSMUST00000152328 Tial1-008 retained_intron Mus_musculus 0 342
ENSDART00000147774 tial1-003 retained_intron Danio_rerio 0 329
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.000007 58
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.00009 55
ENSMUST00000134661 Knstrn-001 protein_coding Mus_musculus 0.0003 53

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