C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cytohesin 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000106305 Cyth1-202 ENSMUSG00000017132 10090 - 11:118164166-118248592 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBladderBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000106305
Transcript ID Adipose Adrenal Bladder Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000106305 4.635±0.32 7.895±2.64 5.295±0.45 5.442±3.31 12.458±6.36 8.779±3.79 7.125±3.11 4.684±2.02 2.517±0.76 10.233±2.16 11.090±1.47 11.932±4.17 7.883±4.30 5.368±1.94

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007YS CIL_0007YS_0002 VISTA 11:117565410-118167678
CIL_00062H CIL_00062H_0002 CGP 11:118021723-118248592
CIL_00062I CIL_00062I_0002 CGP 11:118132019-118290244

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005086 IBA ARF guanyl-nucleotide exchange factor activity
GO:0005515 IPI protein binding
GO:0005829 IDA cytosol
GO:0005886 ISS plasma membrane
GO:0005923 IDA tight junction
GO:0008289 IEA lipid binding
GO:0030155 IBA regulation of cell adhesion
GO:0031234 IDA extrinsic component of cytoplasmic side of plasma membrane
GO:0032012 IEA regulation of ARF protein signal transduction
GO:0043547 IEA positive regulation of GTPase activity
GO:0090162 IMP establishment of epithelial cell polarity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000050576 CYTH3 (1 of 3)-201 protein_coding Danio_rerio 0 730
ENSDART00000156553 CYTH3 (1 of 3)-001 protein_coding Danio_rerio 0 721
ENST00000361101 CYTH1-201 protein_coding Homo_sapiens 0 1506
ENST00000446868 CYTH1-001 protein_coding Homo_sapiens 0 1506
ENST00000585509 CYTH1-016 protein_coding Homo_sapiens 0 1469
ENST00000586043 CYTH1-005 protein_coding Homo_sapiens 0 693
ENST00000586175 CYTH1-011 processed_transcript Homo_sapiens 0 359
ENST00000586299 CYTH1-017 retained_intron Homo_sapiens 0 276
ENST00000586430 CYTH1-010 retained_intron Homo_sapiens 0 351
ENST00000587308 CYTH1-020 protein_coding Homo_sapiens 0 499
ENST00000589296 CYTH1-012 protein_coding Homo_sapiens 0 276
ENST00000589297 CYTH1-015 protein_coding Homo_sapiens 0 1469
ENST00000589768 CYTH1-018 protein_coding Homo_sapiens 0 996
ENST00000590300 CYTH1-006 protein_coding Homo_sapiens 0 544
ENST00000591455 CYTH1-002 protein_coding Homo_sapiens 0 1485
ENST00000591574 CYTH1-009 nonsense_mediated_decay Homo_sapiens 0 383

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